Pre_GI: BLASTP Hits

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Query: NC_017179:4023139:4038171 Clostridium difficile BI1, complete genome

Start: 4038171, End: 4038560, Length: 390

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:3935500:395739739573973957795399Clostridium difficile 630, complete genomeconjugative transposon membrane protein1e-65248
NC_009089:428075:447165447165447563399Clostridium difficile 630, complete genomeconjugative transposon protein2e-65247
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome8e-52201
NC_013895:1332832:136449813644981365004507Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein1e-49194
NC_021175:1597613:159712315971231597629507Streptococcus oligofermentans AS 1.3089, complete genomeconjugative transposon membrane protein1e-49194
NC_013798:1778758:178118917811891781581393Streptococcus gallolyticus UCN34, complete genomeTn916 conserved hypothetical protein1e-49194
NC_009089:581655:590184590184590576393Clostridium difficile 630, complete genomeconjugative transposon membrane protein3e-49193
NC_016630:1247251:125990712599071260338432Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein4e-49192
NC_017341:428500:439417439417439812396Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,hypothetical protein2e-48190
NC_017347:424500:435755435755436150396Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon membrane protein2e-48190
NC_002758:434462:448587448587449024438Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-48190
NC_009089:3889811:390424339042433904635393Clostridium difficile 630, complete genomeconjugative transposon membrane protein8e-47185
NC_004668:2198027:220360022036002203989390Enterococcus faecalis V583, complete genomehypothetical protein3e-46183
NC_017201:93500:106586106586106990405Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB26,hypothetical protein8e-1268.9
NC_007103:230872:235027235027235431405Bacillus cereus E33L plasmid pE33L466, complete sequencehypothetical protein9e-1268.9
NC_014172:100718:104868104868105272405Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequencehypothetical protein5e-1166.6
NC_007333:537292:5372925372925407743483Thermobifida fusca YX, complete genomesimilar to ATPase involved in chromosome partitioning7e-0752.8