Pre_GI: BLASTP Hits

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Query: NC_017179:4023139:4029605 Clostridium difficile BI1, complete genome

Start: 4029605, End: 4029928, Length: 324

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:4015119:402158540215854021908324Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein9e-58221
NC_013316:4095905:410237141023714102694324Clostridium difficile R20291, complete genomeconjugative transposon protein9e-58221
NC_015977:2966971:298380429838042984127324Roseburia hominis A2-183 chromosome, complete genomeconjugative transposon protein1e-54211
NC_009089:428075:453006453006453332327Clostridium difficile 630, complete genomeconjugative transposon protein3e-48189
NC_009089:581655:585695585695586009315Clostridium difficile 630, complete genomeconjugative transposon protein1e-41168
NC_013798:1778758:178574717857471786061315Streptococcus gallolyticus UCN34, complete genomeTn916 conserved hypothetical protein2e-41167
NC_013895:1332832:136905313690531369367315Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein2e-41167
NC_009089:3889811:390997839099783910292315Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein3e-41166
NC_016630:1247251:126440812644081264722315Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein7e-41165
NC_009089:3935500:396363539636353963961327Clostridium difficile 630, complete genomeconjugative transposon protein2e-28124
NC_004668:2198027:226634122663412266655315Enterococcus faecalis V583, complete genomehypothetical protein2e-24110
NC_000964:521975:532483532483532863381Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein9e-0855.8