Pre_GI: BLASTP Hits

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Query: NC_017179:3621306:3637952 Clostridium difficile BI1, complete genome

Start: 3637952, End: 3638155, Length: 204

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:3613288:362991636299163630137222Clostridium difficile CD196 chromosome, complete genomesmall acid-soluble spore protein B8e-32135
NC_018664:1729794:174415017441501744362213Clostridium acidurici 9a chromosome, complete genomesmall acid-soluble spore protein, alpha/beta type5e-23106
NC_012914:1824955:182560418256041825813210Paenibacillus sp. JDR-2, complete genomesmall acid-soluble spore protein alpha/beta type8e-1268.9
NC_014964:1309845:133105813310581331285228Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completealpha/beta type small acid-soluble spore protein7e-1165.9
NC_015958:1422319:144287414428741443101228Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomesmall acid-soluble spore protein alpha/beta type1e-1065.5
NC_014964:1309845:133142913314291331656228Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completealpha/beta type small acid-soluble spore protein3e-1063.5
NC_010001:473354:476696476696476917222Clostridium phytofermentans ISDg, complete genomesmall acid-soluble spore protein alpha/beta type5e-1063.2
NC_013791:2273389:228677622867762286979204Bacillus pseudofirmus OF4 chromosome, complete genomesmall acid-soluble spore protein3e-0960.5
NC_002570:1220180:123621112362111236414204Bacillus halodurans C-125, complete genomesmall acid-soluble spore protein (major alpha-type SASP)2e-0858.2
NC_012914:6618317:662440766244076624676270Paenibacillus sp. JDR-2, complete genomesmall acid-soluble spore protein alpha/beta type2e-0857.8
NC_011725:4600000:460808946080894608286198Bacillus cereus B4264 chromosome, complete genomesmall, acid-soluble spore protein B2e-0857.8
NC_011772:4565418:457334445733444573541198Bacillus cereus G9842, complete genomesmall, acid-soluble spore protein B2e-0857.4
NC_013406:6568273:660057566005756600862288Paenibacillus sp. Y412MC10 chromosome, complete genomesmall acid-soluble spore protein alpha/beta type4e-0856.6
NC_000964:2146000:215543721554372155655219Bacillus subtilis subsp. subtilis str. 168, complete genomesmall acid-soluble spore protein (alpha/beta-type SASP)1e-0755.1
NC_020291:5808856:582516758251675825355189Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesmall, acid-soluble spore protein 11e-0755.1
NC_004193:2692136:270382427038242704033210Oceanobacillus iheyensis HTE831, complete genomesmall acid-soluble spore protein3e-0753.9
NC_015589:3085442:310694731069473107243297Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesmall acid-soluble spore protein alpha/beta type5e-0753.1
NC_016627:1485799:152818615281861528407222Clostridium clariflavum DSM 19732 chromosome, complete genomesmall, acid-soluble spore protein, alpha/beta type1e-0652
NC_018515:937994:951826951826952047222Desulfosporosinus meridiei DSM 13257 chromosome, complete genomesmall, acid-soluble spore protein, alpha/beta type1e-0652
NC_014098:2109416:211908921190892119316228Bacillus tusciae DSM 2912 chromosome, complete genome2e-0651.2
NC_007907:2830574:283318728331872833405219Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0649.7
NC_007103:230872:272733272733272948216Bacillus cereus E33L plasmid pE33L466, complete sequencesmall acid-soluble spore protein8e-0648.9