Pre_GI: BLASTP Hits

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Query: NC_017179:3222015:3232625 Clostridium difficile BI1, complete genome

Start: 3232625, End: 3233188, Length: 564

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:3214063:322467332246733225236564Clostridium difficile CD196 chromosome, complete genomeV-type sodium ATP synthase subunit E7e-91332
NC_013921:2375900:238889223888922389494603Thermoanaerobacter italicus Ab9 chromosome, complete genomeH+transporting two-sector ATPase E subunit5e-1787.4
NC_014209:2257316:227031022703102270912603Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,H+transporting two-sector ATPase E subunit7e-1787
NC_010321:2319820:233145223314522332054603Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeH+-transporting two-sector ATPase subunit E1e-1582.4
NC_014964:2301835:231346723134672314069603Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeH+transporting two-sector ATPase subunit E1e-1582.4
NC_010320:2397395:241070424107042411306603Thermoanaerobacter sp. X514 chromosome, complete genomeH+-transporting two-sector ATPase subunit E1e-1479.3
NC_014538:2396559:240986824098682410470603Thermoanaerobacter sp. X513 chromosome, complete genomeH+transporting two-sector ATPase subunit E1e-1479.3
NC_012563:2979147:299183329918332992432600Clostridium botulinum A2 str. Kyoto, complete genomeV-type ATPase, E subunit7e-1477
NC_009697:2680607:269068126906812691280600Clostridium botulinum A str. ATCC 19397 chromosome, completeV-type ATPase, E subunit3e-1168.6
NC_010723:2735196:274487827448782745468591Clostridium botulinum E3 str. Alaska E43, complete genomeATP synthase (E/31 kDa) subunit8e-0960.1
NC_010674:2930259:294056529405652941155591Clostridium botulinum B str. Eklund 17B, complete genomeATP synthase (E/31 kDa) subunit2e-0858.5
NC_015425:906969:915968915968916564597Clostridium botulinum BKT015925 chromosome, complete genomeATP synthase (E/31 kDa) subunit3e-0858.2
NC_015562:627000:634515634515635126612Methanotorris igneus Kol 5 chromosome, complete genomeV-type proton ATPase subunit E2e-0652.4
NC_013192:815854:825142825142825693552Leptotrichia buccalis DSM 1135, complete genomeH+transporting two-sector ATPase E subunit4e-0651.2
NC_008593:841291:850364850364850960597Clostridium novyi NT, complete genomeATP synthase (E/31 kDa) subunit9e-0650.1