Pre_GI: BLASTP Hits

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Query: NC_017179:3222015:3231323 Clostridium difficile BI1, complete genome

Start: 3231323, End: 3231640, Length: 318

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:3214063:322337132233713223694324Clostridium difficile CD196 chromosome, complete genomeV-type ATP synthase subunit F4e-53206
NC_015425:906969:917572917572917880309Clostridium botulinum BKT015925 chromosome, complete genomeV-type ATPase, G subunit3e-22103
NC_014377:2033781:205574720557472056076330Thermosediminibacter oceani DSM 16646 chromosome, complete genomeVacuolar H+transporting two-sector ATPase F subunit3e-22103
NC_008593:841291:851968851968852276309Clostridium novyi NT, complete genomeATP synthase (F/14-kDa) subunit3e-22103
NC_012563:2979147:299051629905162990833318Clostridium botulinum A2 str. Kyoto, complete genomeV-type ATPase, G subunit1e-21102
NC_009697:2680607:268936426893642689672309Clostridium botulinum A str. ATCC 19397 chromosome, completeV-type ATP synthase subunit F4e-21100
NC_010723:2735196:274356027435602743871312Clostridium botulinum E3 str. Alaska E43, complete genomeV-type ATPase, G subunit3e-21100
NC_010674:2930259:293924729392472939558312Clostridium botulinum B str. Eklund 17B, complete genomeATP synthase (F/14-kDa) subunit3e-21100
NC_014209:2257316:226897822689782269307330Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,Vacuolar H+transporting two-sector ATPase F subunit1e-2098.6
NC_013192:815854:826778826778827086309Leptotrichia buccalis DSM 1135, complete genomeVacuolar H+transporting two-sector ATPase F subunit2e-2097.8
NC_013921:2375900:238756023875602387889330Thermoanaerobacter italicus Ab9 chromosome, complete genomeVacuolar H+transporting two-sector ATPase F subunit3e-2097.1
NC_014964:2301835:231213523121352312464330Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeVacuolar H+transporting two-sector ATPase subunit F6e-2096.3
NC_014538:2396559:240853624085362408865330Thermoanaerobacter sp. X513 chromosome, complete genomeVacuolar H+transporting two-sector ATPase subunit F6e-2096.3
NC_010320:2397395:240937224093722409707336Thermoanaerobacter sp. X514 chromosome, complete genomeV-type ATP synthase subunit F5e-2096.3
NC_010321:2319820:233012023301202330455336Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeV-type ATP synthase subunit F5e-2096.3
NC_003366:1901898:191223419122341912551318Clostridium perfringens str. 13, complete genomeV-type ATP synthase subunit F1e-1995.1
NC_008262:1795914:180159518015951801912318Clostridium perfringens SM101, complete genomeV-type ATPase, G subunit1e-1995.1
NC_008261:2117207:212754421275442127861318Clostridium perfringens ATCC 13124, complete genomeV-type ATPase, G subunit1e-1995.1
NC_009785:130252:138111138111138431321Streptococcus gordonii str. Challis substr. CH1, complete genomeATP synthase (F/14-kDa) subunit3e-1684
NC_007681:1300068:130903313090331309353321Methanosphaera stadtmanae DSM 3091, complete genomeAhaF2e-0858.2
NC_015574:2057602:206856420685642068884321Methanobacterium sp. SWAN-1 chromosome, complete genomeV-type ATP synthase subunit F4e-0857
NC_016148:1021138:102214110221411022482342Thermovirga lienii DSM 17291 chromosome, complete genomeVacuolar H+transporting two-sector ATPase F subunit5e-0856.6