Pre_GI: BLASTP Hits

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Query: NC_017179:2539031:2558580 Clostridium difficile BI1, complete genome

Start: 2558580, End: 2558813, Length: 234

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010516:1382000:1389249138924913905501302Clostridium botulinum B1 str. Okra, complete genomeglycine reductase complex component B, gamma subunit, selenocysteine-containing9e-28122
NC_010520:1427981:1435777143577714370781302Clostridium botulinum A3 str. Loch Maree, complete genomeglycine reductase complex component B, gamma subunit, selenocysteine-containing1e-27122
NC_012563:1464000:1471349147134914726501302Clostridium botulinum A2 str. Kyoto, complete genomeglycine reductase, selenoprotein B1e-27122
NC_014330:2026193:2035146203514620364441299Brachyspira pilosicoli 95/1000 chromosome, complete genomeglycine/sarcosine/betaine reductase selenoprotein GrdB5e-27119
NC_018607:662697:672695672695672928234Brachyspira pilosicoli B2904 chromosome, complete genomeglycine/sarcosine/betaine reductase selenoprotein GrdB8e-27119
NC_014150:3085013:309528130952813095514234Brachyspira murdochii DSM 12563 chromosome, complete genomeselenoprotein B, glycine/betaine/sarcosine/D- proline reductase family2e-26117
NC_018604:789575:799575799575799808234Brachyspira pilosicoli WesB complete genomeglycine/sarcosine/betaine reductase selenoprotein GrdB2e-26117
NC_010718:497222:5021915021915034981308Natranaerobius thermophilus JW/NM-WN-LF, complete genomeselenoprotein B, glycine/betaine/sarcosine/D-proline reductase family2e-23107
NC_014328:3066628:3076704307670430780171314Clostridium ljungdahlii ATCC 49587 chromosome, complete genomebetaine reductase complex component B subunit gamma3e-1993.6
NC_014328:2990790:3022254302225430235671314Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeglycine reductase complex component B subunit gamma6e-1992.8