Pre_GI: BLASTP Hits

Some Help

Query: NC_017179:1378875:1394529 Clostridium difficile BI1, complete genome

Start: 1394529, End: 1395374, Length: 846

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1370000:138475513847551385600846Clostridium difficile CD196 chromosome, complete genomehypothetical protein5e-150530
NC_014964:1309845:133177213317721332614843Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completedegV family protein1e-38160
NC_011830:2940500:294702929470292947874846Desulfitobacterium hafniense DCB-2, complete genomedegV family protein6e-34144
NC_014614:1259236:126054912605491261394846Clostridium sticklandii, complete genomehypothetical protein3e-32139
NC_014652:666227:672819672819673661843Caldicellulosiruptor hydrothermalis 108 chromosome, completedegv family protein4e-31135
NC_015949:2002752:201749520174952018337843Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomedegV family protein2e-29129
NC_010718:2385400:240048324004832401364882Natranaerobius thermophilus JW/NM-WN-LF, complete genomedegV family protein3e-28125
NC_014829:3877701:389057738905773891443867Bacillus cellulosilyticus DSM 2522 chromosome, complete genomedegV family protein2e-26120
NC_016894:2931213:295253329525332953402870Acetobacterium woodii DSM 1030 chromosome, complete genomehypothetical protein5e-26118
NC_009617:68779:859518595186799849Clostridium beijerinckii NCIMB 8052 chromosome, complete genomedegV family protein4e-25115
NC_020291:5641444:565586756558675656703837Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDegV family protein4e-25115
NC_014328:1263139:126726812672681268140873Clostridium ljungdahlii ATCC 49587 chromosome, complete genomedegV family protein2e-24113
NC_014328:4249032:426469942646994265538840Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative degV protein1e-23110
NC_014614:260782:271273271273272157885Clostridium sticklandii, complete genomehypothetical protein3e-23108
NC_010003:1360472:139994513999451400823879Petrotoga mobilis SJ95, complete genomedegV family protein5e-23108
NC_014219:2284000:230039723003972301242846Bacillus selenitireducens MLS10 chromosome, complete genomedegV family protein5e-23108
NC_011830:3025437:302543730254373026318882Desulfitobacterium hafniense DCB-2, complete genomedegV family protein5e-23108
NC_020210:661236:678947678947679819873Geobacillus sp. GHH01, complete genomeDegV domain protein2e-22106
NC_007350:2019623:203136720313672032230864Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,hypothetical protein5e-22105
NC_009633:3522933:352605035260503526907858Alkaliphilus metalliredigens QYMF chromosome, complete genomeDegV family protein4e-22105
NC_016593:762216:794047794047794910864Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeDegV3e-22105
NC_018664:1279950:129455712945571295384828Clostridium acidurici 9a chromosome, complete genomeputative DegV domain-containing protein6e-22104
NC_014960:1950648:195690819569081957768861Anaerolinea thermophila UNI-1, complete genomehypothetical protein8e-22104
NC_014314:1485500:151226815122681513110843Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDegV family protein8e-22104
NC_010163:63209:808368083681684849Acholeplasma laidlawii PG-8A chromosome, complete genomeDegV family protein1e-21103
NC_011567:2556915:257174025717402572582843Anoxybacillus flavithermus WK1, complete genomehypothetical protein2e-21102
NC_013192:107672:1285421285421310462505Leptotrichia buccalis DSM 1135, complete genomedegV family protein6e-21101
NC_013385:1669510:168998216899821690845864Ammonifex degensii KC4, complete genomedegV family protein6e-21101
NC_020207:2240115:224100922410092241869861Enterococcus faecium NRRL B-2354, complete genomeHypothetical protein DUF194, DegV family1e-20100
NC_016047:3599095:360297136029713603816846Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeprotein DegV2e-2099.4
NC_019896:577594:580490580490581335846Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-2099
NC_011978:975333:9999629999621000828867Thermotoga neapolitana DSM 4359, complete genomeDegV family protein4e-2098.6
NC_017195:3426000:344258234425823443427846Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeprotein DegV4e-2098.6
NC_013199:1407742:141013914101391410981843Lactobacillus rhamnosus Lc 705, complete genomeDegV family protein5e-2098.2
NC_009785:387910:389427389427390290864Streptococcus gordonii str. Challis substr. CH1, complete genomeDegV family fatty acid binding protein1e-1997.4
NC_018866:611588:624980624980625837858Dehalobacter sp. DCA chromosome, complete genomehypothetical protein2e-1996.7
NC_018867:677848:689424689424690281858Dehalobacter sp. CF chromosome, complete genomedegV family protein2e-1996.7
NC_018704:81733:105348105348106190843Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein2e-1996.3
NC_014624:3741764:376050537605053761389885Eubacterium limosum KIST612 chromosome, complete genomedegV family protein3e-1995.9
NC_014654:2277461:228460422846042285461858Halanaerobium sp. 'sapolanicus' chromosome, complete genomedegV family protein1e-1894
NC_009486:1293510:131971913197191320585867Thermotoga petrophila RKU-1 chromosome, complete genomedegV family protein1e-1894
NC_010184:4909183:494969649496964950538843Bacillus weihenstephanensis KBAB4, complete genomedegV family protein1e-1893.6
NC_010483:1385000:138758813875881388454867Thermotoga sp. RQ2, complete genomedegV family protein2e-1892.8
NC_013642:1317114:134332313433231344189867Thermotoga naphthophila RKU-10, complete genomedegV family protein2e-1892.8
NC_017208:5143500:516096051609605161802843Bacillus thuringiensis serovar chinensis CT-43 chromosome, completedegV family protein7e-1891.3
NC_016751:1524848:154659615465961547474879Marinitoga piezophila KA3 chromosome, complete genomeEDD domain-containing protein, DegV family8e-1891.3
NC_011725:5075285:511135151113515112193843Bacillus cereus B4264 chromosome, complete genomedegV family protein8e-1890.9
NC_011772:5021404:505780550578055058647843Bacillus cereus G9842, complete genomedegV family protein8e-1890.9
NC_017342:1848031:188838418883841889223840Staphylococcus aureus subsp. aureus TCH60 chromosome, completeDegV family protein9e-1890.9
NC_000853:1480478:148047814804781481344867Thermotoga maritima MSB8, complete genomehypothetical protein1e-1790.5
NC_014614:2434017:243732624373262438189864Clostridium sticklandii, complete genomehypothetical protein1e-1790.1
NC_013890:808791:828680828680829537858Dehalococcoides sp. GT chromosome, complete genomedegV family protein1e-1790.1
NC_003909:4854379:488964548896454890487843Bacillus cereus ATCC 10987, complete genomedegV family protein8e-1787.8
NC_011658:4925346:494267549426754943517843Bacillus cereus AH187 chromosome, complete genomedegV family protein8e-1787.8
NC_011969:4841358:487747448774744878316843Bacillus cereus Q1 chromosome, complete genomedegv family protein8e-1787.8
NC_016771:4882886:489499848949984895840843Bacillus cereus NC7401, complete genomedegV family protein8e-1787.8
NC_005945:4898841:491789649178964918738843Bacillus anthracis str. Sterne, complete genomedegV family protein7e-1787.8
NC_014314:212579:226230226230227114885Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDegV family protein7e-1787.8
NC_014335:4848389:486618348661834867025843Bacillus cereus biovar anthracis str. CI chromosome, completeDegV family protein7e-1787.8
NC_003997:4876415:491655949165594917401843Bacillus anthracis str. Ames, complete genomedegV family protein7e-1787.8
NC_005957:4904000:492135849213584922200843Bacillus thuringiensis serovar konkukian str. 97-27, completedegV family protein7e-1787.8
NC_016779:4864056:489803748980374898879843Bacillus cereus F837/76 chromosome, complete genomehypothetical protein7e-1787.8
NC_012659:4877410:491658549165854917427843Bacillus anthracis str. A0248, complete genomedegV family protein7e-1787.8
NC_012581:4882525:491900949190094919851843Bacillus anthracis str. CDC 684 chromosome, complete genomedegV family protein7e-1787.8
NC_012472:4908245:494327449432744944116843Bacillus cereus 03BB102, complete genomedegV family protein7e-1787.8
NC_008600:4898000:493300849330084933850843Bacillus thuringiensis str. Al Hakam, complete genomedegV family protein7e-1787.8
NC_007530:4877500:491668549166854917527843Bacillus anthracis str. 'Ames Ancestor', complete genomedegv family protein7e-1787.8
NC_016941:1411500:141151314115131412352840Staphylococcus aureus subsp. aureus MSHR1132, complete genomeDegV family protein9e-1787.4
NC_010723:2873886:287650528765052877350846Clostridium botulinum E3 str. Alaska E43, complete genomeDegV family protein1e-1687
NC_011773:4940921:497787949778794978721843Bacillus cereus AH820 chromosome, complete genomedegV family protein1e-1687
NC_014220:1162948:116294811629481163811864Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomedegV family protein2e-1686.3
NC_010674:3049500:305311430531143053959846Clostridium botulinum B str. Eklund 17B, complete genomeDegV family protein4e-1582
NC_004193:375416:633697633697634554858Oceanobacillus iheyensis HTE831, complete genomehypothetical protein1e-1480.1
NC_020291:5093138:509668050966805097519840Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDegV family protein2e-1480.1
NC_012470:258287:262529262529263401873Streptococcus equi subsp. zooepidemicus, complete genomeDegV family protein3e-1375.9
NC_009718:643200:682637682637683485849Fervidobacterium nodosum Rt17-B1, complete genomeDegV family protein3e-1168.9
NC_010001:109893:124837124837125703867Clostridium phytofermentans ISDg, complete genomeDegV family protein5e-1168.6
NC_015161:84526:871458714588011867Deinococcus proteolyticus MRP chromosome, complete genomedegV family protein6e-1064.7
NC_008025:1152594:116800311680031168848846Deinococcus geothermalis DSM 11300, complete genomedegV family protein2e-0962.8
NC_003485:1228149:124327912432791244118840Streptococcus pyogenes MGAS8232, complete genomehypothetical protein3e-0962.4
NC_002737:1207880:122441112244111225250840Streptococcus pyogenes M1 GAS, complete genomehypothetical protein3e-0962.4
NC_007930:50801:539455394554787843Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,DegV family protein8e-0857.8
NC_006055:689956:689956689956690786831Mesoplasma florum L1, complete genomeputative fatty acid binding/lipid transport protein4e-0755.5