Pre_GI: BLASTP Hits

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Query: NC_017179:1133510:1136664 Clostridium difficile BI1, complete genome

Start: 1136664, End: 1137131, Length: 468

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009633:1595501:161419916141991614663465Alkaliphilus metalliredigens QYMF chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein1e-57221
NC_009922:2323083:232902223290222329450429Alkaliphilus oremlandii OhILAs, complete genomeYbaK/prolyl-tRNA synthetase associated region6e-41166
NC_018643:320197:319718319718320200483Alpha proteobacterium HIMB5 chromosome, complete genomeproline--tRNA ligase editing protein4e-1580.5
NC_014960:1735786:180358618035861804053468Anaerolinea thermophila UNI-1, complete genomehypothetical protein5e-0856.6
NC_014330:841841:844762844762845223462Brachyspira pilosicoli 95/1000 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated region1e-1892.4
NC_018607:2184832:218775121877512188212462Brachyspira pilosicoli B2904 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein1e-1892.4
NC_018604:2303239:230616023061602306621462Brachyspira pilosicoli WesB complete genomeYbaK/prolyl-tRNA synthetase associated region1e-1892.4
NC_013315:1123733:112688711268871127354468Clostridium difficile CD196 chromosome, complete genomeregulatory protein1e-86317
NC_019903:3048132:305211230521123052570459Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,hypothetical protein1e-38158
NC_011769:2542000:256048325604832560947465Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeybaK/ebsC protein6e-0856.6
NC_014650:3438466:345162834516283452074447Geobacillus sp. Y4.1MC1 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated protein1e-0549.3
NC_015660:3467579:348326634832663483712447Geobacillus thermoglucosidasius C56-YS93 chromosome, completeYbaK/prolyl-tRNA synthetase associated protein1e-0549.3
NC_008054:245184:267263267263267712450Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein4e-35146
NC_015516:1222632:124567512456751246178504Melissococcus plutonius ATCC 35311, complete genometranscriptional regulator6e-0649.7
NC_009376:1633283:164124516412451641649405Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeprolyl-tRNA synthetase4e-0753.9
NC_009073:529148:540356540356540751396Pyrobaculum calidifontis JCM 11548, complete genomeYbaK/prolyl-tRNA synthetase associated region9e-0752.8
NC_014364:1263427:127549512754951275950456Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated region7e-1889.4
NC_018750:3249756:326590532659053266399495Streptomyces venezuelae ATCC 10712, complete genomePeptidyl-dipeptidase dcp2e-0858.2
NC_012883:1603744:160374416037441604496753Thermococcus sibiricus MM 739, complete genomeNucleotide pyrophosphohydrolase9e-0649.3
NC_010525:612000:631357631357631752396Thermoproteus neutrophilus V24Sta, complete genomeYbaK/prolyl-tRNA synthetase associated region2e-0857.8
NC_014160:1239811:126688212668821267349468Thermosphaera aggregans DSM 11486 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated region8e-0959.3
NC_006526:1976779:200293520029352003396462Zymomonas mobilis subsp. mobilis ZM4, complete genomehypothetical protein1e-34144