Query: NC_017168:4363000 Yersinia pestis A1122 chromosome, complete genome
Start: 4363000, End: 4386268, Length: 23269
Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008149:3022970 | 3022970 | 3045599 | 22630 | Yersinia pestis Nepal516, complete genome | 0 | 22170 | BLASTN svg | BLASTP svg |
NC_004088:3186954 | 3186954 | 3209513 | 22560 | Yersinia pestis KIM, complete genome | 0 | 22170 | BLASTN svg | BLASTP svg |
NC_005810:1413305 | 1413305 | 1437579 | 24275 | Yersinia pestis biovar Microtus str. 91001, complete genome | 0 | 21820 | BLASTN svg | BLASTP svg |
NC_003143:1441211 | 1441211 | 1462231 | 21021 | Yersinia pestis CO92, complete genome | 0 | 21670 | BLASTN svg | BLASTP svg |
NC_010159:1558000 | 1558000 | 1577861 | 19862 | Yersinia pestis Angola, complete genome | 0 | 21650 | BLASTN svg | BLASTP svg |
NC_010465:3046904 | 3046904 | 3069915 | 23012 | Yersinia pseudotuberculosis YPIII, complete genome | 0 | 21250 | BLASTN svg | BLASTP svg |
NC_006155:1567306 | 1567306 | 1590296 | 22991 | Yersinia pseudotuberculosis IP 32953, complete genome | 0 | 20980 | BLASTN svg | BLASTP svg |
NC_010634:1565788 | 1565788 | 1588793 | 23006 | Yersinia pseudotuberculosis PB1/+, complete genome | 0 | 20890 | BLASTN svg | BLASTP svg |
NC_008150:1147883 | 1147883 | 1166877 | 18995 | Yersinia pestis Antiqua, complete genome | 0 | 16640 | BLASTN svg | BLASTP svg |
NC_014121:3553809 | 3553809 | 3580015 | 26207 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 1e-70 | 276 | BLASTN svg | BLASTP svg |
CP002797:4656327 | 4656327 | 4680716 | 24390 | Escherichia coli NA114, complete genome | 9e-25 | 123 | BLASTN svg | BLASTP svg |
NC_007946:4875997 | 4875997 | 4919696 | 43700 | Escherichia coli UTI89, complete genome | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_004431:5123325 | 5123325 | 5149090 | 25766 | Escherichia coli CFT073, complete genome | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_011750:4978000 | 4978000 | 5000280 | 22281 | Escherichia coli IAI39 chromosome, complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
AC_000091:4534935 | 4534935 | 4559041 | 24107 | Escherichia coli W3110 DNA, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
CP002185:4791811 | 4791811 | 4817790 | 25980 | Escherichia coli W, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
CU928160:4570498* | 4570498 | 4615099 | 44602 | Escherichia coli IAI1 chromosome, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_000913:4528278 | 4528278 | 4552384 | 24107 | Escherichia coli K12, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_007613:4403070 | 4403070 | 4429295 | 26226 | Shigella boydii Sb227, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_008253:4817864 | 4817864 | 4862760 | 44897 | Escherichia coli 536, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_012880:1091486 | 1091486 | 1116951 | 25466 | Dickeya dadantii Ech703, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |