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Query: NC_017168:3192817 Yersinia pestis A1122 chromosome, complete genome

Start: 3192817, End: 3217169, Length: 24353

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome010030BLASTN svgBLASTP svg
NC_015224:24735822473582249262519044Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-165589BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-86327BLASTN svgBLASTP svg
NC_004631:948054*94805498991041857Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-62248BLASTN svgBLASTP svg
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome3e-55224BLASTN svgBLASTP svg
NC_012214:1650523*1650523168104730525Erwinia pyrifoliae Ep1/96, complete genome5e-51210BLASTN svgBLASTP svg
NC_010067:892729*89272992523832510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-37165BLASTN svgBLASTP svg
NC_013850:1753716*1753716178468730972Klebsiella variicola At-22 chromosome, complete genome4e-33151BLASTN svgBLASTP svg
NC_015566:3417951*3417951345859940649Serratia sp. AS12 chromosome, complete genome4e-30141BLASTN svgBLASTP svg
NC_011149:15784511578451159811519665Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-26129BLASTN svgBLASTP svg
NC_010468:1816359*1816359186342947071Escherichia coli ATCC 8739, complete genome2e-22115BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-20109BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome1e-20109BLASTN svgBLASTP svg
NC_009792:80833280833283532926998Citrobacter koseri ATCC BAA-895, complete genome1e-20109BLASTN svgBLASTP svg
NC_000913:2042935*2042935206659923665Escherichia coli K12, complete genome1e-20109BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome1e-20109BLASTN svgBLASTP svg
NC_009800:2083465*2083465210667323209Escherichia coli HS, complete genome5e-20107BLASTN svgBLASTP svg
NC_004547:18375001837500185898821489Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-18101BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014394:2228470*2228470225229223823Gallionella capsiferriformans ES-2 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009792:14797791479779150315123373Citrobacter koseri ATCC BAA-895, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008027:29090002909000292988020881Pseudomonas entomophila L48, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014121:22479132247913227137723465Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-0763.9BLASTN svgBLASTP svg
NC_014500:24028812402881243009627216Dickeya dadantii 3937 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome3e-0661.9BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg