Pre_GI: BLASTN Hits

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Query: NC_017168:144000 Yersinia pestis A1122 chromosome, complete genome

Start: 144000, End: 166999, Length: 23000

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003063:20593112059311208899929689Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-0971.9BLASTN svgBLASTP svg
NC_003305:112033020330Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-0971.9BLASTN svgBLASTP svg
NC_009848:35823843582384360261620233Bacillus pumilus SAFR-032, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003317:392271*39227141315320883Brucella melitensis 16M chromosome I, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_020260:33558143355814338153125718Cronobacter sakazakii Sp291, complete genome7e-81309BLASTN svgBLASTP svg
NC_013282:551219*55121958904737829Cronobacter turicensis, complete genome8e-96359BLASTN svgBLASTP svg
NC_012912:32591332591334833122419Dickeya zeae Ech1591, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014923:2439197*2439197246272623530Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_015675:2567000*2567000258988822889Mesorhizobium opportunistum WSM2075 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020126:7661551*7661551768494523395Myxococcus stipitatus DSM 14675, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012917:83372183372187179538075Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015740:36783423678342371659938258Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_019673:89541889541891638420967Saccharothrix espanaensis DSM 44229 complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003911:253400*25340027913725738Silicibacter pomeroyi DSS-3, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014165:25330402533040256380530766Thermobispora bispora DSM 43833 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-1693.7BLASTN svgBLASTP svg
NC_015224:64734164734167410326763Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-0867.9BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome1e-33153BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome1e-33153BLASTN svgBLASTP svg
NC_008150:51378351378354909935317Yersinia pestis Antiqua, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome9e-25123BLASTN svgBLASTP svg
NC_005810:2180303*2180303220909928797Yersinia pestis biovar Microtus str. 91001, complete genome1e-33153BLASTN svgBLASTP svg
NC_005810:40453034045303406820222900Yersinia pestis biovar Microtus str. 91001, complete genome025590BLASTN svgBLASTP svg
NC_003143:67562267562269837822757Yersinia pestis CO92, complete genome9e-25123BLASTN svgBLASTP svg
NC_003143:39874839874842431625569Yersinia pestis CO92, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome1e-33153BLASTN svgBLASTP svg
NC_004088:39238043923804394664622843Yersinia pestis KIM, complete genome9e-25123BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome1e-33153BLASTN svgBLASTP svg
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome9e-25123BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome1e-33153BLASTN svgBLASTP svg
NC_008149:31886031886034352424665Yersinia pestis Nepal516, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome9e-25123BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome1e-33153BLASTN svgBLASTP svg
NC_006155:17231317231319559923287Yersinia pseudotuberculosis IP 32953, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:2376245*2376245240318526941Yersinia pseudotuberculosis PB1/+, complete genome1e-33153BLASTN svgBLASTP svg
NC_010634:16690016690019017923280Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:40011544001154402548424331Yersinia pseudotuberculosis PB1/+, complete genome9e-25123BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome1e-33153BLASTN svgBLASTP svg
NC_010465:66020766020767915818952Yersinia pseudotuberculosis YPIII, complete genome9e-25123BLASTN svgBLASTP svg