Pre_GI: BLASTN Hits

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Query: NC_017160:945176 Yersinia pestis D182038 chromosome, complete genome

Start: 945176, End: 972781, Length: 27606

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008150:36122436122439094629723Yersinia pestis Antiqua, complete genome038330BLASTN svgBLASTP svg
NC_010465:933488*93348895909925612Yersinia pseudotuberculosis YPIII, complete genome032740BLASTN svgBLASTP svg
NC_003143:1033500*1033500105953426035Yersinia pestis CO92, complete genome025890BLASTN svgBLASTP svg
NC_008149:35294283529428355543826011Yersinia pestis Nepal516, complete genome025840BLASTN svgBLASTP svg
NC_004088:3661601*3661601368761226012Yersinia pestis KIM, complete genome025830BLASTN svgBLASTP svg
NC_010634:3692321*3692321371595823638Yersinia pseudotuberculosis PB1/+, complete genome022620BLASTN svgBLASTP svg
NC_006155:3779381*3779381380559426214Yersinia pseudotuberculosis IP 32953, complete genome022310BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome018130BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome018090BLASTN svgBLASTP svg
NC_014500:177824*17782420069822875Dickeya dadantii 3937 chromosome, complete genome2e-84321BLASTN svgBLASTP svg
NC_013421:16311416311418959926486Pectobacterium wasabiae WPP163, complete genome9e-84319BLASTN svgBLASTP svg
NC_014228:30229033022903304367320771Xenorhabdus nematophila ATCC 19061, complete genome2e-56228BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome8e-41176BLASTN svgBLASTP svg
NC_020211:4484817*4484817450328218466Serratia marcescens WW4, complete genome8e-38167BLASTN svgBLASTP svg
NC_010634:31557413155741318046024720Yersinia pseudotuberculosis PB1/+, complete genome1e-33153BLASTN svgBLASTP svg
NC_006155:32379903237990326294924960Yersinia pseudotuberculosis IP 32953, complete genome1e-33153BLASTN svgBLASTP svg
NC_013592:956829*95682998781830990Dickeya dadantii Ech586, complete genome2e-32149BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome7e-29137BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome3e-25125BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome6e-23117BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome1e-21113BLASTN svgBLASTP svg
NC_014500:1066911*1066911109884731937Dickeya dadantii 3937 chromosome, complete genome1e-21113BLASTN svgBLASTP svg
NC_015224:88953688953690956920034Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-20109BLASTN svgBLASTP svg
NC_013508:275081*27508130064325563Edwardsiella tarda EIB202, complete genome6e-20107BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_004631:38419753841975386463222658Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-1797.6BLASTN svgBLASTP svg
NC_003198:38551573855157387914223986Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1797.6BLASTN svgBLASTP svg
NC_010634:33680003368000339029322294Yersinia pseudotuberculosis PB1/+, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004547:843475*84347586442120947Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004547:13850013850015906820569Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009792:4017510*4017510404823430725Citrobacter koseri ATCC BAA-895, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_010159:37791293779129380108621958Yersinia pestis Angola, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012917:27862832786283280578619504Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1385.7BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_015224:15147471514747154041825672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-1383.8BLASTN svgBLASTP svg
NC_015224:4473230*4473230449714523916Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-1383.8BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-1281.8BLASTN svgBLASTP svg
NC_013592:2338403*2338403235809919697Dickeya dadantii Ech586, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010465:2383219*2383219240542422206Yersinia pseudotuberculosis YPIII, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010159:2546590*2546590256968123092Yersinia pestis Angola, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004088:2491303*2491303251808626784Yersinia pestis KIM, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003198:27694492769449279300723559Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1179.8BLASTN svgBLASTP svg
NC_004631:27553062755306277886423559Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1179.8BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1179.8BLASTN svgBLASTP svg
NC_013421:1954915*1954915197410019186Pectobacterium wasabiae WPP163, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015224:1914833*1914833193998525153Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-1177.8BLASTN svgBLASTP svg
NC_008149:3790897*3790897381416023264Yersinia pestis Nepal516, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010159:74181974181976361621798Yersinia pestis Angola, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010465:4222586*4222586424312420539Yersinia pseudotuberculosis YPIII, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012214:20190002019000204685227853Erwinia pyrifoliae Ep1/96, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,9e-1073.8BLASTN svgBLASTP svg
NC_010102:28817142881714290709925386Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,9e-1073.8BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_009092:13053551305355132893623582Shewanella loihica PV-4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014541:643604*64360466816624563Ferrimonas balearica DSM 9799 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008150:26813272681327270532824002Yersinia pestis Antiqua, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008149:13171091317109134111024002Yersinia pestis Nepal516, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005810:27398782739878276387423997Yersinia pestis biovar Microtus str. 91001, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013421:40060854006085403278526701Pectobacterium wasabiae WPP163, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013592:20591382059138209167632539Dickeya dadantii Ech586, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005773:17688517688520456427680Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_006155:751235*75123577140420170Yersinia pseudotuberculosis IP 32953, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str8e-0763.9BLASTN svgBLASTP svg
NC_009778:17174581717458175914341686Enterobacter sakazakii ATCC BAA-894, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010465:39195723919572394091021339Yersinia pseudotuberculosis YPIII, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010634:73201673201675316421149Yersinia pseudotuberculosis PB1/+, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011080:28979772897977291952121545Salmonella enterica subsp. enterica serovar Newport str. SL254,8e-0763.9BLASTN svgBLASTP svg
NC_015224:13910881391088142166930582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-0763.9BLASTN svgBLASTP svg
NC_012912:29985112998511302450925999Dickeya zeae Ech1591, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-0661.9BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome3e-0661.9BLASTN svgBLASTP svg