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Query: NC_017160:2212806:2233585 Yersinia pestis D182038 chromosome, complete genome

Start: 2233585, End: 2233674, Length: 90

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017265:2213500:22337612233761223385090Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,tRNA-Ser4e-0960.1
NC_017168:3433804:34543933454393345448290Yersinia pestis A1122 chromosome, complete genometRNA-Ser4e-0960.1
NC_014029:2285323:23060852306085230617490Yersinia pestis Z176003 chromosome, complete genometRNA-Ser4e-0960.1
NC_009381:1205900:12266101226610122669990Yersinia pestis Pestoides F chromosome, complete genometRNA-Ser4e-0960.1
NC_010465:2383219:24039662403966240405590Yersinia pseudotuberculosis YPIII, complete genometRNA-Ser4e-0960.1
NC_004088:2491303:25120972512097251218387Yersinia pestis KIM, complete genometRNA-Ser2e-0857.8
NC_012912:1788308:18170891817089181717890Dickeya zeae Ech1591, complete genometRNA-Ser1e-0755.1
NC_013592:1730505:17543831754383175447290Dickeya dadantii Ech586, complete genometRNA-Ser1e-0755.1
NC_017047:1796000:17966461796646179673590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser7e-0752.8
NC_017047:1796000:17960761796076179616590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser7e-0752.8
NC_014500:3023762:30311823031182303127190Dickeya dadantii 3937 chromosome, complete genometRNA-Ser8e-0752.4
NC_007005:2149275:21619072161907216199690Pseudomonas syringae pv. syringae B728a, complete genometRNA-Ser9e-0752.4
NC_004129:2034500:20420892042089204217890Pseudomonas fluorescens Pf-5, complete genometRNA-Ser2e-0651.2
NC_009439:2337024:23382122338212233830190Pseudomonas mendocina ymp, complete genometRNA-Ser3e-0650.4
NC_016830:4809210:48237234823723482380987Pseudomonas fluorescens F113 chromosome, complete genometRNA-Ser8e-0648.9