Pre_GI: BLASTN Hits

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Query: NC_017154:671816 Yersinia pestis D106004 chromosome, complete genome

Start: 671816, End: 694752, Length: 22937

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome021880BLASTN svgBLASTP svg
NC_004088:39238043923804394664622843Yersinia pestis KIM, complete genome017270BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome016270BLASTN svgBLASTP svg
NC_008150:34958513495851351954723697Yersinia pestis Antiqua, complete genome015630BLASTN svgBLASTP svg
NC_003143:67562267562269837822757Yersinia pestis CO92, complete genome015630BLASTN svgBLASTP svg
NC_010159:10719371071937109241320477Yersinia pestis Angola, complete genome015600BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome015320BLASTN svgBLASTP svg
NC_010634:40011544001154402548424331Yersinia pseudotuberculosis PB1/+, complete genome015270BLASTN svgBLASTP svg
NC_010465:66020766020767915818952Yersinia pseudotuberculosis YPIII, complete genome08572BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,02331BLASTN svgBLASTP svg
NC_015663:770485*77048579596825484Enterobacter aerogenes KCTC 2190 chromosome, complete genome0906BLASTN svgBLASTP svg
NC_014837:3739408*3739408376471125304Pantoea sp. At-9b chromosome, complete genome0803BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete5e-131476BLASTN svgBLASTP svg
NC_009831:1255995*1255995127895522961Shewanella sediminis HAW-EB3, complete genome7e-115422BLASTN svgBLASTP svg
NC_010939:1633000*1633000166140328404Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete3e-89337BLASTN svgBLASTP svg
NC_015733:443122*44312246159918478Pseudomonas putida S16 chromosome, complete genome5e-88333BLASTN svgBLASTP svg
NC_009439:4404942*4404942442988324942Pseudomonas mendocina ymp, complete genome2e-87331BLASTN svgBLASTP svg
NC_009512:469000*46900049317124172Pseudomonas putida F1, complete genome7e-81309BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome4e-79303BLASTN svgBLASTP svg
NC_004578:568236*56823659272224487Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-74287BLASTN svgBLASTP svg
NC_007912:909112*90911293451825407Saccharophagus degradans 2-40, complete genome1e-73285BLASTN svgBLASTP svg
NC_015379:6226661*6226661626523538575Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,6e-72280BLASTN svgBLASTP svg
NC_007645:6407370*6407370643016222793Hahella chejuensis KCTC 2396, complete genome1e-70276BLASTN svgBLASTP svg
NC_009053:1668500*1668500169468326184Actinobacillus pleuropneumoniae L20, complete genome1e-69272BLASTN svgBLASTP svg
NC_009434:796878*79687882874331866Pseudomonas stutzeri A1501, complete genome6e-66260BLASTN svgBLASTP svg
NC_008260:2340824*2340824238894248119Alcanivorax borkumensis SK2, complete genome1e-60242BLASTN svgBLASTP svg
NC_008463:632869*63286965598423116Pseudomonas aeruginosa UCBPP-PA14, complete genome5e-60240BLASTN svgBLASTP svg
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome3e-58234BLASTN svgBLASTP svg
NC_015947:3991696*3991696401521623521Burkholderia sp. JV3 chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_015856:1182974*1182974120901726044Collimonas fungivorans Ter331 chromosome, complete genome3e-52214BLASTN svgBLASTP svg
NC_013416:1429881*1429881145213822258Aggregatibacter actinomycetemcomitans D11S-1, complete genome7e-50206BLASTN svgBLASTP svg
NC_007086:4489153*4489153450718918037Xanthomonas campestris pv. campestris str. 8004, complete genome1e-48202BLASTN svgBLASTP svg
NC_003902:4430621*4430621444960618986Xanthomonas campestris pv. campestris str. ATCC 33913, complete1e-48202BLASTN svgBLASTP svg
NC_014323:961825*96182598122819404Herbaspirillum seropedicae SmR1 chromosome, complete genome7e-44186BLASTN svgBLASTP svg
NC_011071:4000620*4000620403191731298Stenotrophomonas maltophilia R551-3, complete genome7e-44186BLASTN svgBLASTP svg
NC_007508:4476726*4476726449836521640Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome1e-42182BLASTN svgBLASTP svg
NC_014733:2363838*2363838239108027243Methylovorus sp. MP688 chromosome, complete genome4e-42180BLASTN svgBLASTP svg
NC_012968:2228943*2228943225222323281Methylotenera mobilis JLW8, complete genome3e-40174BLASTN svgBLASTP svg
NC_012969:2476318*2476318252045544138Methylovorus glucosetrophus SIP3-4 chromosome, complete genome2e-38168BLASTN svgBLASTP svg
NC_009465:90000*9000013018540186Candidatus Vesicomyosocius okutanii HA, complete genome6e-38167BLASTN svgBLASTP svg
NC_007947:2447635*2447635249025042616Methylobacillus flagellatus KT, complete genome2e-35159BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-33153BLASTN svgBLASTP svg
NC_013959:2449315*2449315247282523511Sideroxydans lithotrophicus ES-1 chromosome, complete genome1e-33153BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-33153BLASTN svgBLASTP svg
NC_010552:752007*75200777809926093Burkholderia ambifaria MC40-6 chromosome 2, complete sequence2e-31145BLASTN svgBLASTP svg
NC_015138:1582458*1582458160012917672Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete9e-31143BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome9e-31143BLASTN svgBLASTP svg
NC_008752:1523768*1523768154381320046Acidovorax avenae subsp. citrulli AAC00-1, complete genome9e-31143BLASTN svgBLASTP svg
NC_007650:722961*72296174620423244Burkholderia thailandensis E264 chromosome II, complete sequence6e-29137BLASTN svgBLASTP svg
NC_015061:59624759624762407627830Rahnella sp. Y9602 chromosome, complete genome3e-27131BLASTN svgBLASTP svg
NC_009952:2381601*2381601241824736647Dinoroseobacter shibae DFL 12, complete genome5e-26127BLASTN svgBLASTP svg
NC_009075:2428248*2428248244904320796Burkholderia pseudomallei 668 chromosome II, complete sequence9e-25123BLASTN svgBLASTP svg
NC_005810:40453034045303406820222900Yersinia pestis biovar Microtus str. 91001, complete genome9e-25123BLASTN svgBLASTP svg
NC_012721:1986436*1986436201260326168Burkholderia glumae BGR1 chromosome 2, complete genome2e-22115BLASTN svgBLASTP svg
NC_006351:2398403*2398403241919020788Burkholderia pseudomallei K96243 chromosome 2, complete sequence5e-20107BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome8e-19103BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome8e-19103BLASTN svgBLASTP svg
NC_002971:1523065*1523065154336920305Coxiella burnetii RSA 493, complete genome8e-19103BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome8e-19103BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome8e-19103BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome8e-19103BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome8e-19103BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome8e-19103BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome8e-19103BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome8e-19103BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome8e-19103BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome8e-19103BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome8e-19103BLASTN svgBLASTP svg
NC_009727:357206*35720637934622141Coxiella burnetii Dugway 7E9-12, complete genome8e-19103BLASTN svgBLASTP svg
NC_009078:2351046*2351046237054119496Burkholderia pseudomallei 1106a chromosome II, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_007435:1077792*1077792110044222651Burkholderia pseudomallei 1710b chromosome II, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_010634:29600002960000298209922100Yersinia pseudotuberculosis PB1/+, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014118:2316000*2316000234104325044Burkholderia sp. CCGE1002 chromosome chromosome 2, complete8e-1693.7BLASTN svgBLASTP svg
NC_010676:2869936*2869936289564625711Burkholderia phytofirmans PsJN chromosome 2, complete sequence8e-1693.7BLASTN svgBLASTP svg
NC_010634:28108152810815283272221908Yersinia pseudotuberculosis PB1/+, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_006155:28938022893802291787224071Yersinia pseudotuberculosis IP 32953, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003143:33468343346834337009923266Yersinia pestis CO92, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004088:16229411622941164556522625Yersinia pestis KIM, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005810:29053622905362292838523024Yersinia pestis biovar Microtus str. 91001, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_006155:32127963212796323445221657Yersinia pseudotuberculosis IP 32953, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008149:15565811556581157548818908Yersinia pestis Nepal516, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008150:24518722451872247509923228Yersinia pestis Antiqua, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010159:28784992878499290014121643Yersinia pestis Angola, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010465:15506171550617157325522639Yersinia pseudotuberculosis YPIII, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010634:31291743129174315220423031Yersinia pseudotuberculosis PB1/+, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003143:28493772849377287209922723Yersinia pestis CO92, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004088:18018191801819182425322435Yersinia pestis KIM, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_005810:26134562613456263609922644Yersinia pestis biovar Microtus str. 91001, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006155:30407693040769306409923331Yersinia pseudotuberculosis IP 32953, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008149:24111612411161243409922939Yersinia pestis Nepal516, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010159:18614651861465188409922635Yersinia pestis Angola, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010465:17240001724000174609922100Yersinia pseudotuberculosis YPIII, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007509:64400064400066633222333Burkholderia sp. 383 chromosome 3, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014623:7331860*7331860735320421345Stigmatella aurantiaca DW4/3-1 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_003143:28045002804500282209917600Yersinia pestis CO92, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004088:1851500*1851500188954638047Yersinia pestis KIM, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_005810:25496802549680258809938420Yersinia pestis biovar Microtus str. 91001, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010634:11754041175404121321037807Yersinia pseudotuberculosis PB1/+, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010159:18185001818500183609917600Yersinia pestis Angola, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008150:43737224373722439711823397Yersinia pestis Antiqua, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_003143:87536787536791053535169Yersinia pestis CO92, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004088:35053833505383354055935177Yersinia pestis KIM, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_006155:35961203596120363277836659Yersinia pseudotuberculosis IP 32953, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008149:33732293373229340909935871Yersinia pestis Nepal516, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008150:25996612599661262209922439Yersinia pestis Antiqua, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:3269010*3269010329227823269Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:35098803509880354653836659Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015677:3520524*3520524354474924226Ramlibacter tataouinensis TTB310 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007712:43350043350045759924100Sodalis glossinidius str. 'morsitans', complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007963:11908471190847124782656980Chromohalobacter salexigens DSM 3043, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013416:668152*66815269868530534Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015713:2453409*2453409249799944591Simkania negevensis Z chromosome gsn.131, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014562:2871765*2871765290090029136Pantoea vagans C9-1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_004545:15650*156506959953950Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006155:34564883456488347575719270Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:33680003368000339029322294Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013171:1194500*1194500122104426545Anaerococcus prevotii DSM 20548, complete genome2e-0765.9BLASTN svgBLASTP svg
NS_000191:782337*78233780392821592Uncultured Termite group 1 bacterium phylotype Rs-D17, complete7e-0763.9BLASTN svgBLASTP svg
NC_010673:205500*20550022759922100Borrelia hermsii DAH, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015497:37940003794000381999125992Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008150:28226892822689284340720719Yersinia pestis Antiqua, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005810:12309761230976125037019395Yersinia pestis biovar Microtus str. 91001, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome3e-0661.9BLASTN svgBLASTP svg