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Query: NC_017154:3094000 Yersinia pestis D106004 chromosome, complete genome

Start: 3094000, End: 3121952, Length: 27953

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003143:28956172895617291809922483Yersinia pestis CO92, complete genome039920BLASTN svgBLASTP svg
NC_008149:12216371221637124331521679Yersinia pestis Nepal516, complete genome039780BLASTN svgBLASTP svg
NC_004088:12917541291754131420722454Yersinia pestis KIM, complete genome039660BLASTN svgBLASTP svg
NC_008150:27858302785830280809922270Yersinia pestis Antiqua, complete genome016320BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome011920BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome011850BLASTN svgBLASTP svg
NC_015224:14402831440283145849618214Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-139504BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome3e-74287BLASTN svgBLASTP svg
NC_013421:32376333237633325919921567Pectobacterium wasabiae WPP163, complete genome1e-58236BLASTN svgBLASTP svg
NC_009832:42698044269804429650026697Serratia proteamaculans 568, complete genome8e-41176BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_012560:13220001322000135714535146Azotobacter vinelandii DJ, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_021150:13220001322000135715735158Azotobacter vinelandii CA6, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008595:25466962546696258480338108Mycobacterium avium 104, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_002755:83139783139785005418658Mycobacterium tuberculosis CDC1551, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002945:83102983102985365622628Mycobacterium bovis AF2122/97, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008769:86067086067087969619027Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009525:83051383051384921918707Mycobacterium tuberculosis H37Ra, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009565:83307683307685178218707Mycobacterium tuberculosis F11, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012207:83103083103085360922580Mycobacterium bovis BCG str. Tokyo 172, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015633:17020001702000172537323374Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_014837:2758239*2758239277859920361Pantoea sp. At-9b chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015556:819503*81950384290123399Pseudomonas fulva 12-X chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013956:19949701994970201970624737Pantoea ananatis LMG 20103 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013282:37811493781149380484323695Cronobacter turicensis, complete genome3e-0661.9BLASTN svgBLASTP svg