Pre_GI: BLASTN Hits

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Query: NC_017062:61500 Rickettsia typhi str. B9991CWPP chromosome, complete genome

Start: 61500, End: 84005, Length: 22506

Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006142:57571*575718059923029Rickettsia typhi str. Wilmington, complete genome08984BLASTN svgBLASTP svg
NC_009881:70807*708079046919663Rickettsia akari str. Hartford, complete genome01306BLASTN svgBLASTP svg
NC_009881:92929*9292911990326975Rickettsia akari str. Hartford, complete genome02119BLASTN svgBLASTP svg
NC_009882:100000*10000012209922100Rickettsia rickettsii str. 'Sheila Smith', complete genome02198BLASTN svgBLASTP svg
NC_012633:98000*9800012009922100Rickettsia africae ESF-5, complete genome02198BLASTN svgBLASTP svg
NC_010263:100000*10000012209922100Rickettsia rickettsii str. Iowa, complete genome02214BLASTN svgBLASTP svg
NC_000963:83408*8340810609922692Rickettsia prowazekii str. Madrid E, complete genome02924BLASTN svgBLASTP svg
NC_009883:140890*14089016003119142Rickettsia bellii OSU 85-389, complete genome3e-52214BLASTN svgBLASTP svg
NC_007940:1435701*1435701145874023040Rickettsia bellii RML369-C, complete genome3e-52214BLASTN svgBLASTP svg
NC_013061:987744*987744100953721794Pedobacter heparinus DSM 2366, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009802:647901*64790167009922199Campylobacter concisus 13826, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015177:2642368*2642368266519022823Pedobacter saltans DSM 12145 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012563:2721658*2721658274175820101Clostridium botulinum A2 str. Kyoto, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015144:734726*73472676451229787Weeksella virosa DSM 16922 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004461:921364*92136495875837395Staphylococcus epidermidis ATCC 12228, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003909:3606177*3606177364959943423Bacillus cereus ATCC 10987, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003997:3617000*3617000367460757608Bacillus anthracis str. Ames, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005945:3636321*3636321368007243752Bacillus anthracis str. Sterne, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006274:3697255*3697255372593028676Bacillus cereus E33L, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007168:1705763*1705763172469118929Staphylococcus haemolyticus JCSC1435, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007530:3616828*3616828367637859551Bacillus anthracis str. 'Ames Ancestor', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010793:1628500*1628500164809919600Orientia tsutsugamushi str. Ikeda, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011772:3787500*3787500381637528876Bacillus cereus G9842, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014335:3589726*3589726362559935874Bacillus cereus biovar anthracis str. CI chromosome, complete4e-0867.9BLASTN svgBLASTP svg
NC_020054:1335699*1335699135810022402Fibrella aestuarina BUZ 2 drat genome4e-0867.9BLASTN svgBLASTP svg
NC_003912:472000*47200049506923070Campylobacter jejuni RM1221, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009662:222964*22296426489641933Nitratiruptor sp. SB155-2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010793:1811401*1811401187154360143Orientia tsutsugamushi str. Ikeda, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013216:3408608*3408608343378525178Desulfotomaculum acetoxidans DSM 771, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009718:20399820399822257418577Fervidobacterium nodosum Rt17-B1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010172:5447189*5447189548599938811Methylobacterium extorquens PA1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011757:5742290*5742290578349941210Methylobacterium chloromethanicum CM4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013418:459650*45965048361023961Blattabacterium sp. (Periplaneta americana) str. BPLAN, complete3e-0661.9BLASTN svgBLASTP svg
NC_013454:168463*16846319120322741Blattabacterium sp. (Blattella germanica) str. Bge, complete3e-0661.9BLASTN svgBLASTP svg
NC_015638:2045500*2045500206559920100Lacinutrix sp. 5H-3-7-4 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_019960:260997*26099728725926263Prevotella dentalis DSM 3688 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_020195:172229*17222919509922871Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete3e-0661.9BLASTN svgBLASTP svg
NC_009613:13375361337536138159944064Flavobacterium psychrophilum JIP02/86, complete genome3e-0661.9BLASTN svgBLASTP svg