Query: NC_017062:61500 Rickettsia typhi str. B9991CWPP chromosome, complete genome
Start: 61500, End: 84005, Length: 22506
Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria
General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_006142:57571* | 57571 | 80599 | 23029 | Rickettsia typhi str. Wilmington, complete genome | 0 | 8984 | BLASTN svg | BLASTP svg |
NC_000963:83408* | 83408 | 106099 | 22692 | Rickettsia prowazekii str. Madrid E, complete genome | 0 | 2924 | BLASTN svg | BLASTP svg |
NC_010263:100000* | 100000 | 122099 | 22100 | Rickettsia rickettsii str. Iowa, complete genome | 0 | 2214 | BLASTN svg | BLASTP svg |
NC_012633:98000* | 98000 | 120099 | 22100 | Rickettsia africae ESF-5, complete genome | 0 | 2198 | BLASTN svg | BLASTP svg |
NC_009882:100000* | 100000 | 122099 | 22100 | Rickettsia rickettsii str. 'Sheila Smith', complete genome | 0 | 2198 | BLASTN svg | BLASTP svg |
NC_009881:92929* | 92929 | 119903 | 26975 | Rickettsia akari str. Hartford, complete genome | 0 | 2119 | BLASTN svg | BLASTP svg |
NC_009881:70807* | 70807 | 90469 | 19663 | Rickettsia akari str. Hartford, complete genome | 0 | 1306 | BLASTN svg | BLASTP svg |
NC_009883:140890* | 140890 | 160031 | 19142 | Rickettsia bellii OSU 85-389, complete genome | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_007940:1435701* | 1435701 | 1458740 | 23040 | Rickettsia bellii RML369-C, complete genome | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_013061:987744* | 987744 | 1009537 | 21794 | Pedobacter heparinus DSM 2366, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009802:647901* | 647901 | 670099 | 22199 | Campylobacter concisus 13826, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_015177:2642368* | 2642368 | 2665190 | 22823 | Pedobacter saltans DSM 12145 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_012563:2721658* | 2721658 | 2741758 | 20101 | Clostridium botulinum A2 str. Kyoto, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015144:734726* | 734726 | 764512 | 29787 | Weeksella virosa DSM 16922 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_004461:921364* | 921364 | 958758 | 37395 | Staphylococcus epidermidis ATCC 12228, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_003909:3606177* | 3606177 | 3649599 | 43423 | Bacillus cereus ATCC 10987, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_003997:3617000* | 3617000 | 3674607 | 57608 | Bacillus anthracis str. Ames, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_005945:3636321* | 3636321 | 3680072 | 43752 | Bacillus anthracis str. Sterne, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_006274:3697255* | 3697255 | 3725930 | 28676 | Bacillus cereus E33L, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007168:1705763* | 1705763 | 1724691 | 18929 | Staphylococcus haemolyticus JCSC1435, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007530:3616828* | 3616828 | 3676378 | 59551 | Bacillus anthracis str. 'Ames Ancestor', complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010793:1628500* | 1628500 | 1648099 | 19600 | Orientia tsutsugamushi str. Ikeda, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_011772:3787500* | 3787500 | 3816375 | 28876 | Bacillus cereus G9842, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_014335:3589726* | 3589726 | 3625599 | 35874 | Bacillus cereus biovar anthracis str. CI chromosome, complete | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_020054:1335699* | 1335699 | 1358100 | 22402 | Fibrella aestuarina BUZ 2 drat genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_003912:472000* | 472000 | 495069 | 23070 | Campylobacter jejuni RM1221, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_009662:222964* | 222964 | 264896 | 41933 | Nitratiruptor sp. SB155-2, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010793:1811401* | 1811401 | 1871543 | 60143 | Orientia tsutsugamushi str. Ikeda, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013216:3408608* | 3408608 | 3433785 | 25178 | Desulfotomaculum acetoxidans DSM 771, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009718:203998 | 203998 | 222574 | 18577 | Fervidobacterium nodosum Rt17-B1, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010172:5447189* | 5447189 | 5485999 | 38811 | Methylobacterium extorquens PA1, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_011757:5742290* | 5742290 | 5783499 | 41210 | Methylobacterium chloromethanicum CM4, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013418:459650* | 459650 | 483610 | 23961 | Blattabacterium sp. (Periplaneta americana) str. BPLAN, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013454:168463* | 168463 | 191203 | 22741 | Blattabacterium sp. (Blattella germanica) str. Bge, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015638:2045500* | 2045500 | 2065599 | 20100 | Lacinutrix sp. 5H-3-7-4 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_019960:260997* | 260997 | 287259 | 26263 | Prevotella dentalis DSM 3688 chromosome 1, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_020195:172229* | 172229 | 195099 | 22871 | Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_009613:1337536 | 1337536 | 1381599 | 44064 | Flavobacterium psychrophilum JIP02/86, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |