Query: NC_017062:547317 Rickettsia typhi str. B9991CWPP chromosome, complete genome
Start: 547317, End: 570112, Length: 22796
Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria
General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_001318:479709* | 479709 | 507798 | 28090 | Borrelia burgdorferi B31, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_016027:2387832* | 2387832 | 2410099 | 22268 | Gluconacetobacter xylinus NBRC 3288, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_013517:2437574* | 2437574 | 2487616 | 50043 | Sebaldella termitidis ATCC 33386, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_010673:479552* | 479552 | 507388 | 27837 | Borrelia hermsii DAH, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_008277:485299* | 485299 | 510603 | 25305 | Borrelia afzelii PKo, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009879:835227 | 835227 | 856490 | 21264 | Rickettsia canadensis str. McKiel, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_007778:1053462* | 1053462 | 1079599 | 26138 | Rhodopseudomonas palustris HaA2, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_018643:482676* | 482676 | 502241 | 19566 | Alpha proteobacterium HIMB5 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014774:1120383* | 1120383 | 1155508 | 35126 | Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_021182:93000* | 93000 | 144655 | 51656 | Clostridium pasteurianum BC1, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_003198:1117687* | 1117687 | 1142749 | 25063 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_004631:1842050* | 1842050 | 1863126 | 21077 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010424:14657* | 14657 | 43309 | 28653 | Candidatus Desulforudis audaxviator MP104C, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
AC_000091:1083798* | 1083798 | 1106861 | 23064 | Escherichia coli W3110 DNA, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_000913:1087062* | 1087062 | 1106999 | 19938 | Escherichia coli K12, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_002978:918000* | 918000 | 940099 | 22100 | Wolbachia endosymbiont of Drosophila melanogaster, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003197:1207597 | 1207597 | 1232599 | 25003 | Salmonella typhimurium LT2, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_004337:1065609* | 1065609 | 1090711 | 25103 | Shigella flexneri 2a str. 301, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_006905:1186895* | 1186895 | 1215028 | 28134 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008258:1076922* | 1076922 | 1100249 | 23328 | Shigella flexneri 5 str. 8401, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010067:1782998* | 1782998 | 1800983 | 17986 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012416:979484* | 979484 | 1002757 | 23274 | Wolbachia sp. wRi, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_011149:1987291* | 1987291 | 2034236 | 46946 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_011083:1216500 | 1216500 | 1235936 | 19437 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_011080:1209935 | 1209935 | 1234711 | 24777 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010468:2809125* | 2809125 | 2827488 | 18364 | Escherichia coli ATCC 8739, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010102:1979742* | 1979742 | 2001834 | 22093 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007205:1* | 1 | 19569 | 19569 | Candidatus Pelagibacter ubique HTCC1062, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008009:4421992* | 4421992 | 4449115 | 27124 | Acidobacteria bacterium Ellin345, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013716:1178383* | 1178383 | 1205167 | 26785 | Citrobacter rodentium ICC168, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014121:2629075* | 2629075 | 2652336 | 23262 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015663:3466471* | 3466471 | 3505140 | 38670 | Enterobacter aerogenes KCTC 2190 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015968:1709680* | 1709680 | 1732219 | 22540 | Enterobacter asburiae LF7a chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006511:1770000* | 1770000 | 1791816 | 21817 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |