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Query: NC_016944:168530 Vibrio cholerae IEC224 chromosome I, complete sequence

Start: 168530, End: 200597, Length: 32068

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002505:16853216853220059932068Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete049620BLASTN svgBLASTP svg
NC_015633:33800033800035668318684Vibrio anguillarum 775 chromosome chromosome I, complete sequence05648BLASTN svgBLASTP svg
NC_009997:51882215188221522795839738Shewanella baltica OS195, complete genome3e-34155BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome1e-30143BLASTN svgBLASTP svg
NC_014541:41679164167916419249724582Ferrimonas balearica DSM 9799 chromosome, complete genome5e-30141BLASTN svgBLASTP svg
CP002185:38224703822470385930636837Escherichia coli W, complete genome2e-29139BLASTN svgBLASTP svg
CP002516:24676724676726745320687Escherichia coli KO11, complete genome2e-29139BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-29139BLASTN svgBLASTP svg
NC_004741:41320564132056415578223727Shigella flexneri 2a str. 2457T, complete genome2e-29139BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome2e-29139BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome5e-27131BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome5e-27131BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome5e-27131BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome5e-27131BLASTN svgBLASTP svg
NC_010468:23100023100025334622347Escherichia coli ATCC 8739, complete genome5e-27131BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome5e-27131BLASTN svgBLASTP svg
NC_010634:44637274463727449917835452Yersinia pseudotuberculosis PB1/+, complete genome5e-27131BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome5e-27131BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome3e-25125BLASTN svgBLASTP svg
NC_014121:50000695000069503057530507Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-22115BLASTN svgBLASTP svg
NC_010498:38384193838419386683628418Escherichia coli SMS-3-5, complete genome1e-21113BLASTN svgBLASTP svg
NC_008570:23650023650025959923100Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-21111BLASTN svgBLASTP svg
NC_009348:1064664*1064664109873434071Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-20109BLASTN svgBLASTP svg
NC_011751:40745864074586409524320658Escherichia coli UMN026 chromosome, complete genome1e-18103BLASTN svgBLASTP svg
NC_009778:41880004188000423044042441Enterobacter sakazakii ATCC BAA-894, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_013416:875758*87575890109925342Aggregatibacter actinomycetemcomitans D11S-1, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_008258:35815833581583360816926587Shigella flexneri 5 str. 8401, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_006905:37173063717306374009922794Salmonella enterica subsp. enterica serovar Choleraesuis str2e-1489.7BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_008740:443274*44327451891675643Marinobacter aquaeolei VT8, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_013960:45249345249347193019438Nitrosococcus halophilus Nc4 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_009801:39569173956917397533818422Escherichia coli E24377A, complete genome1e-0973.8BLASTN svgBLASTP svg
CU928160:37090813709081373009921019Escherichia coli IAI1 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0973.8BLASTN svgBLASTP svg
AC_000091:39768883976888399503018143Escherichia coli W3110 DNA, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_018419:22600022600024809922100Secondary endosymbiont of Ctenarytaina eucalypti chromosome,2e-0765.9BLASTN svgBLASTP svg
NC_013416:386301*38630140838122081Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008322:46110004611000462903818039Shewanella sp. MR-7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008309:84207284207286931527244Haemophilus somnus 129PT, complete genome1e-0663.9BLASTN svgBLASTP svg