Pre_GI: BLASTP Hits

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Query: NC_016944:1547176:1569969 Vibrio cholerae IEC224 chromosome I, complete sequence

Start: 1569969, End: 1570307, Length: 339

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:1547176:156305615630561563394339Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional repressor RstR3e-59226
NC_016445:1027143:104994310499431050281339Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional repressor RstR3e-59226
NC_016445:1027143:104721810472181047556339Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional repressor RstR3e-59226
NC_002505:1550108:157294315729431573281339Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional repressor RstR3e-59226
NC_002505:1550108:156602715660271566365339Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional repressor RstR3e-59226
NC_005126:1265071:130947513094751309813339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-1476.6
NC_005126:4333767:435394543539454354283339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-1476.6
NC_005126:1613818:162726016272601627598339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-1476.6
NC_005126:4333767:434657743465774346915339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-1476.6
NC_014228:2883500:289160828916082891979372Xenorhabdus nematophila ATCC 19061, complete genomeputative Cryptic phage CTXphi transcriptional repressor rstR5e-1476.3
NC_014228:2883500:289875728987572899128372Xenorhabdus nematophila ATCC 19061, complete genomeputative Cryptic phage CTXphi transcriptional repressor rstR5e-1476.3
NC_008149:4053363:406410640641064064513408Yersinia pestis Nepal516, complete genometranscriptional regulatory protein2e-1064.7
NC_003143:4006884:402561340256134026020408Yersinia pestis CO92, complete genomeputative transcriptional regulatory protein2e-1064.7
NC_006155:4302826:430538543053854305792408Yersinia pseudotuberculosis IP 32953, complete genomeputative transcriptional regulatory protein2e-1064.7
NC_009381:222735:241443241443241850408Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein2e-1064.7
NC_014029:3958811:397754039775403977947408Yersinia pestis Z176003 chromosome, complete genomeputative transcriptional regulatory protein2e-1064.7
NC_017154:3898925:391765439176543918061408Yersinia pestis D106004 chromosome, complete genometranscriptional regulator2e-1064.7
NC_017160:4073611:408435440843544084761408Yersinia pestis D182038 chromosome, complete genometranscriptional regulator2e-1064.7
NC_017168:1631052:164978116497811650188408Yersinia pestis A1122 chromosome, complete genomeputative transcriptional regulator2e-1064.7
NC_017265:4265659:426821842682184268625408Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transcriptional regulator2e-1064.7
NC_005810:4469156:448001144800114480499489Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein1e-1064.7
NC_004088:266543:277204277204277692489Yersinia pestis KIM, complete genometranscriptional repressor1e-1064.7
NC_012962:1068102:108946510894651089866402Photorhabdus asymbiotica, complete genomeputative phage regulator2e-1064.3
NC_012962:1068102:109723810972381097639402Photorhabdus asymbiotica, complete genomeputative phage regulator2e-1064.3
NC_016510:2312481:232574323257432326075333Flavobacterium columnare ATCC 49512 chromosome, complete genomehelix-turN-helix domain protein7e-0959.3
NC_010465:1790739:180572318057231806124402Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, XRE family2e-0858.2
NC_021175:2063611:207187220718722072216345Streptococcus oligofermentans AS 1.3089, complete genomeCro/CI family transcriptional regulator3e-0857.4
NC_017025:1651870:166594816659481666286339Flavobacterium indicum GPTSA100-9, complete genometranscriptional regulator, XRE family6e-0856.2
NC_004129:195347:205065205065205427363Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein, putative1e-0755.5
NC_014657:2127500:214037221403722140905534Caldicellulosiruptor owensensis OL chromosome, complete genomehelix-turn-helix domain protein2e-0754.3
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein9e-0752.4
NC_012583:683887:702423702423702758336Vibrio cholerae O395 chromosome chromosome II, complete sequencecryptic phage CTXphi transcriptional repressor RstR, classical1e-0651.6
NC_009456:557962:561184561184561519336Vibrio cholerae O395 chromosome 1, complete sequencecryptic phage CTXphi transcriptional repressor RstR1e-0651.6
NC_012667:839318:858206858206858550345Vibrio cholerae MJ-1236 chromosome 2, complete genomecryptic phage CTXphi transcriptional repressor RstR1e-0651.6
NC_015573:2463123:248662424866242486842219Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0651.2
NC_005126:4333767:436409043640904364452363Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-0650.8
NC_005126:4333767:437298043729804373342363Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-0650.8
NC_015958:2174731:218947921894792190027549Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0650.4
NC_017068:2827568:284872528487252849108384Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative Xre family transcriptional regulator3e-0650.4
NC_010610:755000:763466763466763780315Lactobacillus fermentum IFO 3956, complete genomehypothetical protein6e-0649.7
NC_016048:1930089:194775419477541948359606Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein6e-0649.7
NC_014964:2272413:229248922924892292878390Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein7e-0649.3
NC_013921:1915377:192814219281421928690549Thermoanaerobacter italicus Ab9 chromosome, complete genometranscriptional regulator, XRE family7e-0649.3
NC_016584:5388500:541244654124465412778333Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator8e-0649.3
NC_016048:751000:769269769269769643375Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein8e-0649.3