Pre_GI: BLASTP Hits

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Query: NC_016944:1547176:1547176 Vibrio cholerae IEC224 chromosome I, complete sequence

Start: 1547176, End: 1560813, Length: 13638

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:1549066:155379315537931554782990Photorhabdus luminescens subsp. laumondii TTO1, complete genome6e-95351
NC_016935:2460795:2480053248005324814591407Paenibacillus mucilaginosus 3016 chromosome, complete genomehemolysin-type calcium-binding protein7e-0759.3
NC_010803:2067539:20675392067539208054313005Chlorobium limicola DSM 245, complete genomeHemolysin-type calcium-binding region4e-0966.6
NC_015690:1929599:1948842194884219502481407Paenibacillus mucilaginosus KNP414 chromosome, complete genomehemolysin-type calcium-binding region protein7e-0759.3
NC_004088:3661601:3665557366555736748899333Yersinia pestis KIM, complete genomehypothetical protein5e-22109
NC_009482:822716:8305498305498325492001Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein4e-0657
NC_015380:412277:413200413200413910711Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genomehypothetical protein2e-0657.8
NC_014311:804157:8142878142878231158829Ralstonia solanacearum PSI07 chromosome, complete genomemetalloprotease, Hemolysin-type calcium-binding region1e-0968.6
NC_009708:986918:99513299513210044469315Yersinia pseudotuberculosis IP 31758 chromosome, complete genomephage minor structural protein7e-23112
NC_006155:3779381:3783316378331637926279312Yersinia pseudotuberculosis IP 32953, complete genomepore forming RTX toxin family protein4e-22109
NC_010634:3692321:3696277369627737056099333Yersinia pseudotuberculosis PB1/+, complete genomepore forming RTX toxin family protein5e-22109
NC_014006:3124818:31543073154307316678612480Sphingobium japonicum UT26S chromosome 1, complete genomeputative Ca2+-binding hemolysin7e-0655.8
NC_015224:1514747:1526945152694515310934149Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative cytotoxin RtxA01098
NC_010159:138879:1441581441581534729315Yersinia pestis Angola, complete genomeputative phage minor structural protein5e-22109
NC_012751:1071589:1075689107568910799784290Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeputative RTX-family protein-102e-22111
NC_012751:1538500:1549965154996515539123948Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeputative RTX-family protein-212e-28130
NC_017160:945176:9531659531659624979333Yersinia pestis D182038 chromosome, complete genomeputative virulence determinant5e-22109
NC_008150:361224:3713313713313806639333Yersinia pestis Antiqua, complete genomeputative virulence determinant5e-22109
NC_005810:3964468:3972453397245339817859333Yersinia pestis biovar Microtus str. 91001, complete genomeputative virulence determinant5e-22109
NC_017168:50391:5846358463677959333Yersinia pestis A1122 chromosome, complete genomeputative virulence determinant5e-22109
NC_003143:1033500:1037479103747910468119333Yersinia pestis CO92, complete genomeputative virulence determinant5e-22109
NC_017265:854492:8624778624778718099333Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative virulence determinant5e-22109
NC_014029:1001000:1009046100904610183789333Yersinia pestis Z176003 chromosome, complete genomeputative virulence determinant5e-22109
NC_016445:1027143:10271431027143104074413602Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeRTX toxin RtxA08962
NC_002505:1550108:15501081550108156378413677Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeRTX toxin RtxA08978
NC_015690:3269000:3283186328318632845711386Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRTX toxins and related Ca2+-binding protein6e-1069.3
NC_016935:3819500:3833626383362638350111386Paenibacillus mucilaginosus 3016 chromosome, complete genomeRTX toxins and-related Ca2+-binding protein3e-1070.5
NC_012962:3499900:35481233548123355871510593Photorhabdus asymbiotica, complete genomeSimilar to RTX toxin RtxA01943
NC_012962:3499900:34999003499900351018910290Photorhabdus asymbiotica, complete genomeSimilar to RTX toxin RtxA02438
NC_016445:984856:9872739872739907643492Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetype VI secretion system secreted protein VgrG3e-161572
NC_016944:1504888:1507306150730615107973492Vibrio cholerae IEC224 chromosome I, complete sequencetype VI secretion system secreted protein VgrG3e-161572
NC_012668:2115228:2130302213030221337933492Vibrio cholerae MJ-1236 chromosome 1, complete sequenceVgrG protein3e-161572
NC_009457:1068000:1068747106874710720343288Vibrio cholerae O395 chromosome 2, complete sequencevgrG protein4e-145518
NC_002505:1507860:1510278151027815137693492Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completevgrG protein3e-161572
NC_012578:1465302:1467720146772014712113492Vibrio cholerae M66-2 chromosome I, complete sequencevgrG protein3e-161572
NC_017154:941065:9512089512089605229315Yersinia pestis D106004 chromosome, complete genomevirulence determinant5e-22109
NC_009381:627685:6356696356696450019333Yersinia pestis Pestoides F chromosome, complete genomevirulence determinant5e-22109
NC_010465:933488:9415759415759509079333Yersinia pseudotuberculosis YPIII, complete genomevirulence determinant6e-22109
NC_008149:3529428:3533384353338435427169333Yersinia pestis Nepal516, complete genomevirulence determinant5e-22109