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Query: NC_016913:83988 Rickettsia rickettsii str. Brazil chromosome, complete genome

Start: 83988, End: 106181, Length: 22194

Host Lineage: Rickettsia rickettsii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens and is composed of two groups, the spotted fever group, and the typhus group. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. This organism was first identified by Dr. Howard Rickets as the causative agent of Rocky Mountain Spotted Fever, which was originally named for its geographic distribution at the time, it is now known to be widespread throughout the North American continent. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. It is passed to the human host from a tick bite, and the tick acts as both a natural reservoir and a vector for disease transmission. Once the organism is endocytosed by the host cell, it quickly escapes the phagozome, and replicates intracellularly, causing cell death and tissue damage. The disease is characterized by a spotted rash and has a high mortality rate if left untreated.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_016050:1088223*1088223111009921877Rickettsia japonica YH, complete genome017520BLASTN svgBLASTP svg
NC_007109:13350371335037135749822462Rickettsia felis URRWXCal2, complete genome1e-23119BLASTN svgBLASTP svg
NC_003103:22595622595624833922384Rickettsia conorii str. Malish 7, complete genome1e-20109BLASTN svgBLASTP svg
NC_012730:33250033250035137618877Rickettsia peacockii str. Rustic, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015722:209722*20972223234422623Candidatus Midichloria mitochondrii IricVA chromosome, complete1e-1179.8BLASTN svgBLASTP svg
NC_016050:23600023600025587419875Rickettsia japonica YH, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014932:985882*985882103391148030Bartonella clarridgeiae 73, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007109:89400089400091609922100Rickettsia felis URRWXCal2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012880:1127997*1127997115596427968Dickeya dadantii Ech703, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009881:166500*16650019436227863Rickettsia akari str. Hartford, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009879:860925*86092589071729793Rickettsia canadensis str. McKiel, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010263:925500*92550094361318114Rickettsia rickettsii str. Iowa, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009900:12200821220082123809918018Rickettsia massiliae MTU5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009882:915500*91550094186526366Rickettsia rickettsii str. 'Sheila Smith', complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009879:475500*47550049498919490Rickettsia canadensis str. McKiel, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010516:2511035*2511035254588934855Clostridium botulinum B1 str. Okra, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010520:2585014*2585014262041935406Clostridium botulinum A3 str. Loch Maree, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010793:1075388*1075388110374328356Orientia tsutsugamushi str. Ikeda, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012563:2680246*2680246272077540530Clostridium botulinum A2 str. Kyoto, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015866:173951*17395119294118991Rickettsia heilongjiangensis 054 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_019978:1410041*1410041143133721297Halobacteroides halobius DSM 5150, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009882:167350*16735019001522666Rickettsia rickettsii str. 'Sheila Smith', complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009749:937412*93741295683519424Francisella tularensis subsp. holarctica FTA, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008369:939356*93935695877619421Francisella tularensis subsp. holarctica OSU18, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007880:935670*93567095713021461Francisella tularensis subsp. holarctica, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003103:164972*16497218767122700Rickettsia conorii str. Malish 7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007109:11052511105251112857523325Rickettsia felis URRWXCal2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009881:23650023650025585219353Rickettsia akari str. Hartford, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020300:960692*96069297958218891Bartonella australis Aust/NH1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_016050:938000*93800095659918600Rickettsia japonica YH, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_016050:15224152243358318360Rickettsia japonica YH, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015866:1144958*1144958116861223655Rickettsia heilongjiangensis 054 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012633:169444*16944418849519052Rickettsia africae ESF-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003103:563961*56396158206318103Rickettsia conorii str. Malish 7, complete genome3e-0661.9BLASTN svgBLASTP svg