Query: NC_016913:83988 Rickettsia rickettsii str. Brazil chromosome, complete genome
Start: 83988, End: 106181, Length: 22194
Host Lineage: Rickettsia rickettsii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria
General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens and is composed of two groups, the spotted fever group, and the typhus group. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. This organism was first identified by Dr. Howard Rickets as the causative agent of Rocky Mountain Spotted Fever, which was originally named for its geographic distribution at the time, it is now known to be widespread throughout the North American continent. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. It is passed to the human host from a tick bite, and the tick acts as both a natural reservoir and a vector for disease transmission. Once the organism is endocytosed by the host cell, it quickly escapes the phagozome, and replicates intracellularly, causing cell death and tissue damage. The disease is characterized by a spotted rash and has a high mortality rate if left untreated.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_016050:1088223* | 1088223 | 1110099 | 21877 | Rickettsia japonica YH, complete genome | 0 | 17520 | BLASTN svg | BLASTP svg |
NC_007109:1335037 | 1335037 | 1357498 | 22462 | Rickettsia felis URRWXCal2, complete genome | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_003103:225956 | 225956 | 248339 | 22384 | Rickettsia conorii str. Malish 7, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_012730:332500 | 332500 | 351376 | 18877 | Rickettsia peacockii str. Rustic, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_015722:209722* | 209722 | 232344 | 22623 | Candidatus Midichloria mitochondrii IricVA chromosome, complete | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_016050:236000 | 236000 | 255874 | 19875 | Rickettsia japonica YH, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014932:985882* | 985882 | 1033911 | 48030 | Bartonella clarridgeiae 73, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_007109:894000 | 894000 | 916099 | 22100 | Rickettsia felis URRWXCal2, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_012880:1127997* | 1127997 | 1155964 | 27968 | Dickeya dadantii Ech703, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_009881:166500* | 166500 | 194362 | 27863 | Rickettsia akari str. Hartford, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_009879:860925* | 860925 | 890717 | 29793 | Rickettsia canadensis str. McKiel, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010263:925500* | 925500 | 943613 | 18114 | Rickettsia rickettsii str. Iowa, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_009900:1220082 | 1220082 | 1238099 | 18018 | Rickettsia massiliae MTU5, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_009882:915500* | 915500 | 941865 | 26366 | Rickettsia rickettsii str. 'Sheila Smith', complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_009879:475500* | 475500 | 494989 | 19490 | Rickettsia canadensis str. McKiel, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010516:2511035* | 2511035 | 2545889 | 34855 | Clostridium botulinum B1 str. Okra, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010520:2585014* | 2585014 | 2620419 | 35406 | Clostridium botulinum A3 str. Loch Maree, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010793:1075388* | 1075388 | 1103743 | 28356 | Orientia tsutsugamushi str. Ikeda, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012563:2680246* | 2680246 | 2720775 | 40530 | Clostridium botulinum A2 str. Kyoto, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015866:173951* | 173951 | 192941 | 18991 | Rickettsia heilongjiangensis 054 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_019978:1410041* | 1410041 | 1431337 | 21297 | Halobacteroides halobius DSM 5150, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_009882:167350* | 167350 | 190015 | 22666 | Rickettsia rickettsii str. 'Sheila Smith', complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_009749:937412* | 937412 | 956835 | 19424 | Francisella tularensis subsp. holarctica FTA, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008369:939356* | 939356 | 958776 | 19421 | Francisella tularensis subsp. holarctica OSU18, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007880:935670* | 935670 | 957130 | 21461 | Francisella tularensis subsp. holarctica, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_003103:164972* | 164972 | 187671 | 22700 | Rickettsia conorii str. Malish 7, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007109:1105251 | 1105251 | 1128575 | 23325 | Rickettsia felis URRWXCal2, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009881:236500 | 236500 | 255852 | 19353 | Rickettsia akari str. Hartford, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_020300:960692* | 960692 | 979582 | 18891 | Bartonella australis Aust/NH1, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_016050:938000* | 938000 | 956599 | 18600 | Rickettsia japonica YH, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_016050:15224 | 15224 | 33583 | 18360 | Rickettsia japonica YH, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015866:1144958* | 1144958 | 1168612 | 23655 | Rickettsia heilongjiangensis 054 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_012633:169444* | 169444 | 188495 | 19052 | Rickettsia africae ESF-5, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_003103:563961* | 563961 | 582063 | 18103 | Rickettsia conorii str. Malish 7, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |