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Query: NC_016842:546661 Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete

Start: 546661, End: 576322, Length: 29662

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Western Samoa in 1953. Treponema pallidum subsp. pertenue causes the chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_000919:54514154514157480129661Treponema pallidum subsp. pallidum str. Nichols, complete genome057490BLASTN svgBLASTP svg
NC_010741:54657354657357623329661Treponema pallidum subsp. pallidum SS14, complete genome057450BLASTN svgBLASTP svg
NC_015714:54267954267957234629668Treponema paraluiscuniculi Cuniculi A chromosome, complete genome055810BLASTN svgBLASTP svg
NC_015578:1582827*1582827160713224306Treponema primitia ZAS-2 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_011959:972798*97279899909326296Thermomicrobium roseum DSM 5159, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_006085:854500*85450088927234773Propionibacterium acnes KPA171202, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006177:52005552005554053820484Symbiobacterium thermophilum IAM 14863, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004193:25220002522000254434522346Oceanobacillus iheyensis HTE831, complete genome3e-0661.9BLASTN svgBLASTP svg