Pre_GI: BLASTP Hits

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Query: NC_016830:3869572:3925830 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 3925830, End: 3926225, Length: 396

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:164362716436271644184558Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein3e-38156
NC_008825:2525380:254374625437462544366621Methylibium petroleiphilum PM1, complete genomehypothetical protein3e-37153
NC_004129:5373886:542417254241725424723552Pseudomonas fluorescens Pf-5, complete genomehypothetical protein7e-37152
NC_015422:1876102:187610218761021876722621Alicycliphilus denitrificans K601 chromosome, complete genomelytic transglycosylase catalytic subunit7e-37152
NC_008782:2326439:234502623450262345646621Acidovorax sp. JS42, complete genomeLytic transglycosylase, catalytic4e-36149
NC_011662:1058794:106148910614891062109621Thauera sp. MZ1T, complete genomeLytic transglycosylase catalytic9e-36148
NC_011901:2983555:298297429829742983558585Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completelytic transglycosylase2e-35147
NC_011992:1234610:123678112367811237371591Acidovorax ebreus TPSY, complete genomeLytic transglycosylase catalytic2e-34144
NC_010170:4533416:453615045361504536755606Bordetella petrii, complete genomeconserved exported protein1e-34144
NC_010002:4544818:455964445596444560249606Delftia acidovorans SPH-1, complete genomeLytic transglycosylase catalytic1e-34144
NC_009138:1974935:201218120121812012771591Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein; putative signal peptide3e-34143
NC_006513:1379735:145965414596541460235582Azoarcus sp. EbN1, complete genomehypothetical protein4e-34142
NC_003919:2639080:263908026390802639691612Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein1e-33141
NC_010170:1498253:153267115326711533261591Bordetella petrii, complete genomeconserved exported protein3e-33140
NC_008752:558828:573364573364573972609Acidovorax avenae subsp. citrulli AAC00-1, complete genomeLytic transglycosylase, catalytic4e-33139
NC_012731:600518:617570617570618088519Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein8e-33138
NC_012691:2614603:265685726568572657447591Tolumonas auensis DSM 9187, complete genomeLytic transglycosylase catalytic3e-32137
NC_012912:483390:515976515976516566591Dickeya zeae Ech1591, complete genomeputative signal peptide1e-30131
NC_020181:3328844:334511033451103345643534Enterobacter aerogenes EA1509E, complete genomeFIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)2e-30130
NC_008344:49039:969949699497584591Nitrosomonas eutropha C91, complete genomeLytic transglycosylase, catalytic4e-29126
NC_009656:4527457:462777946277794628360582Pseudomonas aeruginosa PA7 chromosome, complete genomesoluble lytic murein transglycosylase1e-28124
NC_018080:5091772:515278751527875153368582Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein4e-28123
NC_014532:3555550:357369035736903574481792Halomonas elongata DSM 2581, complete genomelytic transglycosylase, catalytic7e-28122
NC_015566:316340:330295330295330981687Serratia sp. AS12 chromosome, complete genomelytic transglycosylase catalytic subunit1e-26117
NC_015567:313035:330460330460331146687Serratia sp. AS9 chromosome, complete genomelytic transglycosylase catalytic subunit1e-26117
NC_009832:358291:375841375841376533693Serratia proteamaculans 568, complete genomeLytic transglycosylase catalytic2e-26117
NC_016845:4539381:454202745420274542596570Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-26116
NC_014029:331919:360482360482361174693Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-26116
NC_009708:4182460:419818641981864198824639Yersinia pseudotuberculosis IP 31758 chromosome, complete genometransglycosylase1e-22105
NC_004547:611178:624021624021624608588Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-22103
NC_013716:3512950:354301235430123543440429Citrobacter rodentium ICC168, complete genome7e-2095.9
NC_007484:667879:677299677299677862564Nitrosococcus oceani ATCC 19707, complete genomeLytic transglycosylase, catalytic2e-1684
NC_015572:2186394:219838421983842198950567Methylomonas methanica MC09 chromosome, complete genomelytic transglycosylase catalytic subunit3e-1683.6
NC_015850:2048251:208841620884162089186771Acidithiobacillus caldus SM-1 chromosome, complete genomemembrane bound transglycosylase family protein2e-1374.3
NC_017062:547317:569324569324570112789Rickettsia typhi str. B9991CWPP chromosome, complete genomehypothetical protein2e-1167.8
NC_010125:1651687:167257916725791673541963Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transglycosylase1e-0961.6
NC_010554:2646806:265392226539222654470549Proteus mirabilis HI4320, complete genomephage transglycosylase6e-0856.2
NC_007626:2354260:239560523956052396444840Magnetospirillum magneticum AMB-1, complete genomeSoluble lytic murein transglycosylase and related regulatory protein2e-0651.2