Pre_GI: BLASTP Hits

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Query: NC_016830:3869572:3893476 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 3893476, End: 3894552, Length: 1077

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018697:618832:6262226262226273251104Cycloclasticus sp. P1 chromosome, complete genomeHlyD-family secretion protein, yhiI-like protein2e-96352
NC_010814:3673983:3677891367789136789641074Geobacter lovleyi SZ, complete genomesecretion protein HlyD family protein1e-91336
NC_000913:3624826:3627558362755836286251068Escherichia coli K12, complete genomepredicted HlyD family secretion protein4e-90332
AC_000091:3995233:4009813400981340108801068Escherichia coli W3110 DNA, complete genomepredicted HlyD family secretion protein4e-90332
NC_013941:4249871:4252603425260342536701068Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeAuxiliary transport protein, membrane fusion protein (MFP) family5e-90331
NC_010498:3838419:3841151384115138422181068Escherichia coli SMS-3-5, complete genomeMFP family transporter5e-90331
NC_012947:248000:2798862798862809531068Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesecretion protein HlyD5e-90331
NC_012967:3549880:3560223356022335612901068Escherichia coli B str. REL606 chromosome, complete genomeputative HlyD family secretion protein5e-90331
NC_011751:4074586:4077318407731840783851068Escherichia coli UMN026 chromosome, complete genomeputative HlyD family secretion protein5e-90331
CP002185:3822470:3825202382520238262691068Escherichia coli W, complete genomepredicted HlyD family secretion protein4e-90331
NC_011748:3958572:3961304396130439623711068Escherichia coli 55989, complete genomeputative HlyD family secretion protein1e-89330
CU928145:3958572:3961304396130439623711068Escherichia coli 55989 chromosome, complete genomeputative HlyD family secretion protein1e-89330
NC_012691:2614603:2690955269095526920341080Tolumonas auensis DSM 9187, complete genomesecretion protein HlyD family protein2e-89329
NC_007613:3470314:3473046347304634741131068Shigella boydii Sb227, complete genomehypothetical protein3e-88325
NC_007384:3897000:3900936390093639020031068Shigella sonnei Ss046, complete genomehypothetical protein3e-88325
NC_008258:3550500:3554590355459035556571068Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-88325
NC_004741:4160500:4178757417875741798241068Shigella flexneri 2a str. 2457T, complete genomehypothetical protein3e-88325
NC_004337:3590323:3594179359417935952461068Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-88325
NC_017328:3625000:3628896362889636299631068Shigella flexneri 2002017 chromosome, complete genomeAuxiliary transport protein, membrane fusion protein (MFP) family3e-88325
NC_016822:3923908:3927764392776439288311068Shigella sonnei 53G, complete genomehypothetical protein5e-88324
NC_007973:1821753:1824523182452318255901068Ralstonia metallidurans CH34 chromosome 1, complete sequencesecretion protein HlyD1e-87323
NC_017059:747624:7652117652117663111101Rhodospirillum photometricum DSM 122, complete genomeHlyD family secretion protein5e-79295
NC_020541:2264521:226556722655672266403837Rhodanobacter sp. 2APBS1, complete genome6e-69261
NC_014315:2834000:2840079284007928411071029Nitrosococcus watsoni C-113 chromosome, complete genomeHlyD family secretion protein5e-39162
NC_016629:415711:4324784324784335301053Desulfovibrio africanus str. Walvis Bay chromosome, completesecretion protein HlyD family protein7e-22105
NC_014926:819163:8204498204498216151167Thermovibrio ammonificans HB-1 chromosome, complete genomesecretion protein HlyD family protein5e-21102
NC_013960:2761353:278221127822112783191981Nitrosococcus halophilus Nc4 chromosome, complete genomesecretion protein HlyD family protein1e-1687.4
NC_011027:1153592:115490511549051155828924Chlorobaculum parvum NCIB 8327, complete genomeputative ABC transport system, lipoprotein5e-1582
NC_010655:1606901:1647982164798216490041023Akkermansia muciniphila ATCC BAA-835, complete genomesecretion protein HlyD family protein4e-1479.3
NC_015224:1641819:164181916418191642805987Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein4e-1479.3
NC_009253:3317533:3321619332161933226801062Desulfotomaculum reducens MI-1 chromosome, complete genomesecretion protein HlyD family protein2e-1377
NC_014315:1435243:1454424145442414554401017Nitrosococcus watsoni C-113 chromosome, complete genomeHlyD family secretion protein3e-1376.3
NC_007614:1633332:1633332163333216344111080Nitrosospira multiformis ATCC 25196 chromosome 1, completeSecretion protein HlyD6e-1272
NC_015850:1060000:1078648107864810796821035Acidithiobacillus caldus SM-1 chromosome, complete genomesecretion protein HlyD family protein6e-1168.9
NC_009615:1553556:155445415544541555344891Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein8e-1168.2
NC_015942:2213710:2213710221371022147441035Acidithiobacillus ferrivorans SS3 chromosome, complete genomesecretion protein HlyD family protein4e-1066.2
NC_013520:1559000:1563659156365915647051047Veillonella parvula DSM 2008, complete genomesecretion protein HlyD family protein1e-0964.3
NC_013385:1007616:1008807100880710099111105Ammonifex degensii KC4, complete genome4e-0962.4
NC_009454:1577319:158027115802711581248978Pelotomaculum thermopropionicum SI, complete genomemembrane-fusion protein9e-0961.6
NC_015172:2986867:3026377302637730273961020Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomesecretion protein HlyD family protein2e-0860.1
NC_002939:1021297:1021297102129710224691173Geobacter sulfurreducens PCA, complete genomeefflux transporter, RND family, MFP subunit3e-0756.6
NC_009648:4359875:436791343679134368800888Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein3e-0756.6
NC_016845:5162481:517056951705695171456888Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-0756.6
NC_011883:1601552:161016116101611611114954Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,HlyD family secretion protein3e-0756.2
NC_012731:5074000:508209250820925083057966Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein4e-0755.8
NC_020829:4390417:439398043939804394951972Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein5e-0755.8
NC_006347:2861498:286976528697652870763999Bacteroides fragilis YCH46, complete genomehypothetical protein6e-0755.5
NC_003228:2929006:294337829433782944376999Bacteroides fragilis NCTC 9343, complete genomehypothetical protein6e-0755.5
NC_016776:2913966:292835829283582929356999Bacteroides fragilis 638R, complete genomehypothetical protein6e-0755.5
NC_013850:109500:118830118830119795966Klebsiella variicola At-22 chromosome, complete genomesecretion protein HlyD family protein1e-0654.7
NC_011283:105245:113634113634114599966Klebsiella pneumoniae 342 chromosome, complete genomelipoprotein1e-0654.3
NC_014307:3240430:324043032404303241368939Ralstonia solanacearum CFBP2957 chromosome, complete genomesecretion protein hlyd-like protein2e-0653.9
NC_003228:3085793:308579330857933086689897Bacteroides fragilis NCTC 9343, complete genomeputative ABC transport system, lipoprotein2e-0653.5
NC_017098:1149145:1151963115196311529971035Spirochaeta africana DSM 8902 chromosome, complete genomemultidrug resistance efflux pump6e-0652