Pre_GI: BLASTP Hits

Some Help

Query: NC_016822:3946500:3962404 Shigella sonnei 53G, complete genome

Start: 3962404, End: 3962931, Length: 528

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3655876:367027936702793670806528Shigella flexneri 2002017 chromosome, complete genomeTranscriptional regulator gadE3e-97353
NC_009800:3685651:369967736996773700204528Escherichia coli HS, complete genometranscriptional regulator GadE3e-97353
AC_000091:3976888:398152239815223982049528Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator3e-97353
NC_008258:3581583:359568435956843596211528Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-97353
NC_000913:3624826:365638936563893656916528Escherichia coli K12, complete genomeDNA-binding transcriptional activator3e-97353
CP002185:3822470:385414538541453854672528Escherichia coli W, complete genomeDNA-binding transcriptional activator3e-97353
CP002516:246767:251401251401251928528Escherichia coli KO11, complete genomehypothetical protein3e-97353
NC_011748:3983432:402347440234744024001528Escherichia coli 55989, complete genomeDNA-binding transcriptional activator3e-97353
CU928160:3709081:372235137223513722878528Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator3e-97353
NC_004337:3590323:363542336354233635950528Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-97353
NC_004337:3621985:363542336354233635950528Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-97353
AP010958:4313462:432557643255764326103528Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional activator GadE3e-97353
CU928145:3983432:402347440234744024001528Escherichia coli 55989 chromosome, complete genomeDNA-binding transcriptional activator3e-97353
NC_010473:3722571:375413437541343754661528Escherichia coli str. K-12 substr. DH10B, complete genomeacid-induced positive regulator of glutamate-dependent acid resistance3e-97353
NC_007384:3741708:374634237463423746869528Shigella sonnei Ss046, complete genomehypothetical protein3e-97353
NC_016902:246767:251401251401251928528Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-97353
NC_013364:4306000:431785543178554318382528Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional activator GadE3e-97353
NC_013361:4566779:457913545791354579662528Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional activator GadE3e-97353
NC_013353:4313462:432557643255764326103528Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional activator GadE3e-97353
NC_012967:3549880:358785735878573588384528Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional activator3e-97353
NC_012947:248000:252792252792253319528Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLuxR family transcriptional regulator3e-97353
NC_012759:3529657:354488335448833545410528Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator3e-97353
NC_011741:3709081:372235137223513722878528Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator3e-97353
NC_011415:3887997:390350839035083904035528Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-97353
NC_004741:4132056:413789841378984138425528Shigella flexneri 2a str. 2457T, complete genomehypothetical protein3e-97353
NC_010468:231000:235762235762236289528Escherichia coli ATCC 8739, complete genometranscriptional regulator, LuxR family3e-97353
NC_009801:3956917:397017739701773970704528Escherichia coli E24377A, complete genometranscriptional regulator GadE3e-97353
NC_007613:3470314:350393235039323504459528Shigella boydii Sb227, complete genomehypothetical protein2e-96350
NC_010658:3622610:363616936361693636696528Shigella boydii CDC 3083-94, complete genometranscriptional regulator GadE2e-96350
NC_010498:3838419:386630638663063866836531Escherichia coli SMS-3-5, complete genometranscriptional regulator DctR4e-1167.8
NC_008258:3581583:359200235920023592532531Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-1167.8
NC_004337:3590323:363174136317413632271531Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-1167.8
NC_004337:3621985:363174136317413632271531Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-1167.8
NC_007384:3741708:375002237500223750552531Shigella sonnei Ss046, complete genomehypothetical protein3e-1167.8
NC_004741:4132056:414157741415774142107531Shigella flexneri 2a str. 2457T, complete genomehypothetical protein3e-1167.8
NC_013361:4566779:457545245754524575982531Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator3e-1167.8
NC_013364:4306000:431417243141724314702531Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator3e-1167.8
NC_016822:3946500:395872139587213959251531Shigella sonnei 53G, complete genomeputative DNA-binding transcriptional regulator3e-1167.8
NC_017328:3655876:366659736665973667127531Shigella flexneri 2002017 chromosome, complete genomeHTH-type transcriptional regulator dctR3e-1167.8
AP010958:4313462:432189343218934322423531Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA-binding transcriptional regulator6e-1167
CP002185:3822470:385046238504623850992531Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator6e-1167
CU928145:3983432:401979140197914020321531Escherichia coli 55989 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-1167
CP002516:246767:255081255081255611531Escherichia coli KO11, complete genomeregulatory protein LuxR6e-1167
AC_000091:3976888:398520239852023985732531Escherichia coli W3110 DNA, complete genomepredicted DNA-binding ranscriptional regulator6e-1167
NC_000913:3624826:365270636527063653236531Escherichia coli K12, complete genomepredicted DNA-binding ranscriptional regulator6e-1167
NC_010473:3722571:375045137504513750981531Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding ranscriptional regulator6e-1167
NC_009800:3685651:369599436959943696524531Escherichia coli HS, complete genometranscriptional regulator DctR6e-1167
NC_011748:3983432:401979140197914020321531Escherichia coli 55989, complete genomeputative DNA-binding transcriptional regulator6e-1167
NC_009801:3956917:396649439664943967024531Escherichia coli E24377A, complete genometranscriptional regulator DctR6e-1167
CU928160:3709081:371866837186683719198531Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-1167
NC_011415:3887997:389982538998253900355531Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator6e-1167
NC_016902:246767:255081255081255611531Escherichia coli KO11FL chromosome, complete genomeregulatory protein LuxR6e-1167
NC_013353:4313462:432189343218934322423531Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator6e-1167
NC_012967:3549880:358417435841743584704531Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding ranscriptional regulator6e-1167
NC_012947:248000:256472256472257002531Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLuxR family transcriptional regulator6e-1167
NC_012759:3529657:354120035412003541730531Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding ranscriptional regulator6e-1167
NC_011741:3709081:371866837186683719198531Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-1167
NC_010468:231000:239442239442239972531Escherichia coli ATCC 8739, complete genometranscriptional regulator, LuxR family6e-1167
NC_010658:3622610:363248636324863633016531Shigella boydii CDC 3083-94, complete genometranscriptional regulator DctR7e-1166.6
NC_007613:3470314:350024935002493500779531Shigella boydii Sb227, complete genomehypothetical protein7e-1166.6