Pre_GI: BLASTP Hits

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Query: NC_016822:3946500:3957999 Shigella sonnei 53G, complete genome

Start: 3957999, End: 3958565, Length: 567

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:3838419:386543138654313866153723Escherichia coli SMS-3-5, complete genomeSlp family outer membrane lipoprotein3e-98357
NC_017328:3655876:366571036657103666441732Shigella flexneri 2002017 chromosome, complete genomeOuter membrane protein induced after carbon starvation6e-98356
NC_008258:3581583:359111535911153591846732Shigella flexneri 5 str. 8401, complete genomeouter membrane protein induced after carbon starvation6e-98356
NC_013361:4566779:457457445745744575296723Escherichia coli O26:H11 str. 11368 chromosome, complete genome9e-98355
NC_004337:3621985:363098636309863631585600Shigella flexneri 2a str. 301, complete genomeouter membrane protein induced after carbon starvation2e-97354
NC_004741:4132056:414226341422634142862600Shigella flexneri 2a str. 2457T, complete genomeouter membrane protein induced after carbon starvation2e-97354
NC_007384:3741708:375070837507083751307600Shigella sonnei Ss046, complete genomeouter membrane protein induced after carbon starvation2e-97354
NC_004337:3590323:363098636309863631585600Shigella flexneri 2a str. 301, complete genomeouter membrane protein induced after carbon starvation2e-97354
NC_007613:3470314:349949434994943500093600Shigella boydii Sb227, complete genomeSlp2e-97354
NC_011415:3887997:389907338990733899672600Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-97354
NC_010658:3622610:363176436317643632330567Shigella boydii CDC 3083-94, complete genomeouter membrane lipoprotein, Slp family4e-97353
AP010958:4313462:432117143211714321737567Escherichia coli O103:H2 str. 12009 DNA, complete genomeouter membrane lipoprotein Slp4e-97353
CP002185:3822470:384974038497403850306567Escherichia coli W, complete genomeouter membrane lipoprotein4e-97353
NC_010468:231000:240128240128240694567Escherichia coli ATCC 8739, complete genomeouter membrane lipoprotein, Slp family4e-97353
NC_011748:3983432:401906940190694019635567Escherichia coli 55989, complete genomeouter membrane lipoprotein4e-97353
CP002516:246767:255767255767256333567Escherichia coli KO11, complete genomeouter membrane lipoprotein, Slp family4e-97353
CU928145:3983432:401906940190694019635567Escherichia coli 55989 chromosome, complete genomeouter membrane lipoprotein4e-97353
NC_009801:3956917:396577239657723966338567Escherichia coli E24377A, complete genomeouter membrane lipoprotein, Slp family4e-97353
NC_009800:3685651:369527236952723695838567Escherichia coli HS, complete genomeouter membrane lipoprotein, Slp family4e-97353
NC_016902:246767:255767255767256333567Escherichia coli KO11FL chromosome, complete genomeouter membrane lipoprotein, Slp family4e-97353
NC_013364:4306000:431345043134504314016567Escherichia coli O111:H- str. 11128, complete genomeouter membrane lipoprotein Slp4e-97353
NC_013353:4313462:432117143211714321737567Escherichia coli O103:H2 str. 12009, complete genomeouter membrane lipoprotein Slp4e-97353
NC_012967:3549880:358345235834523584018567Escherichia coli B str. REL606 chromosome, complete genomeouter membrane lipoprotein4e-97353
NC_012947:248000:257158257158257724567Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane lipoprotein, Slp family4e-97353
NC_011741:3709081:371794637179463718512567Escherichia coli IAI1 chromosome, complete genomeouter membrane lipoprotein4e-97353
CU928160:3709081:371794637179463718512567Escherichia coli IAI1 chromosome, complete genomeouter membrane lipoprotein4e-97353
AC_000091:3976888:398588839858883986454567Escherichia coli W3110 DNA, complete genomeouter membrane lipoprotein9e-97352
NC_010473:3722571:374972937497293750295567Escherichia coli str. K-12 substr. DH10B, complete genomeouter membrane lipoprotein9e-97352
NC_000913:3624826:365198436519843652550567Escherichia coli K12, complete genomeouter membrane lipoprotein9e-97352
NC_012759:3529657:354047835404783541044567Escherichia coli BW2952 chromosome, complete genomeouter membrane lipoprotein9e-97352
NC_020181:734477:734477734477735058582Enterobacter aerogenes EA1509E, complete genomeStarvation lipoprotein Slp paralog2e-26118
NC_020211:2985157:300866730086673009257591Serratia marcescens WW4, complete genomelipoprotein1e-25115
NC_013282:2582720:260269726026972603230534Cronobacter turicensis, complete genomeUncharacterized lipoprotein yeaY2e-25115
NC_006512:1942000:196239819623981962976579Idiomarina loihiensis L2TR, complete genomeStarvation-inducible outer membrane lipoprotein9e-1166.6
NC_016010:1169850:119107011910701191603534Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSlp family outer membrane protein9e-0960.1
NC_016513:1924242:194397019439701944527558Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeouter membrane protein1e-0859.7
NC_013416:1588369:160804216080421608599558Aggregatibacter actinomycetemcomitans D11S-1, complete genomeouter membrane protein2e-0859.3
NC_009483:2401209:240806424080642408624561Geobacter uraniireducens Rf4 chromosome, complete genomeouter membrane lipoprotein Slp7e-0857
NC_016147:2337244:233724423372442337795552Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeSlp family outer membrane protein4e-0650.8