Pre_GI: BLASTP Hits

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Query: NC_016822:3923908:3934440 Shigella sonnei 53G, complete genome

Start: 3934440, End: 3935642, Length: 1203

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3897000:3907559390755939087611203Shigella sonnei Ss046, complete genomehypothetical protein0781
CP002185:3822470:3831860383186038330621203Escherichia coli W, complete genomepredicted oxidoreductase with FAD/NAD(P)-binding domain0775
NC_010473:3722571:3731976373197637331781203Escherichia coli str. K-12 substr. DH10B, complete genomepredicted oxidoreductase with FAD/NAD(P)-binding domain0775
AC_000091:3995233:4003005400300540042071203Escherichia coli W3110 DNA, complete genomepredicted oxidoreductase, FAD/NAD(P)-binding domain0775
NC_000913:3624826:3634231363423136354331203Escherichia coli K12, complete genomepredicted oxidoreductase with FAD/NAD(P)-binding domain0775
NC_012947:248000:2730772730772742791203Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeHI0933 family protein0773
NC_012967:3549880:3566897356689735680991203Escherichia coli B str. REL606 chromosome, complete genomeputative oxidoreductase with FAD/NAD(P)-binding domain0773
NC_007613:3470314:3481167348116734823691203Shigella boydii Sb227, complete genomehypothetical protein0773
NC_010498:3838419:3847807384780738490091203Escherichia coli SMS-3-5, complete genomepyridine nucleotide-disulfide oxidoreductase family protein0771
NC_011751:4074586:4083974408397440851761203Escherichia coli UMN026 chromosome, complete genomeputative oxidoreductase0769
NC_011748:3983432:4001188400118840023901203Escherichia coli 55989, complete genomeputative oxidoreductase with FAD/NAD(P)-binding domain0768
CU928145:3983432:4001188400118840023901203Escherichia coli 55989 chromosome, complete genomeputative oxidoreductase with FAD/NAD(P)-binding domain0768
NC_013941:4249871:4259284425928442604861203Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePyridine nucleotide-disulfide oxidoreductase family protein0763
NC_004741:4160500:4160583416058341617821200Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0751
NC_004337:3590323:3612066361206636132651200Shigella flexneri 2a str. 301, complete genomehypothetical protein0751
NC_017328:3625000:3646922364692236481211200Shigella flexneri 2002017 chromosome, complete genomehypothetical protein0751
NC_008258:3550500:3572632357263235737861155Shigella flexneri 5 str. 8401, complete genomehypothetical protein0743
NC_014121:5000069:5017679501767950189021224Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein0664
NC_009778:4188000:4193919419391941951211203Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein0647
NC_010634:4463727:4488464448846444898521389Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein2e-178625
NC_008800:4389687:4410848441084844120471200Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein3e-172604
NC_009348:47974:5196551965531491185Aeromonas salmonicida subsp. salmonicida A449, complete genomeflavoprotein2e-137489
NC_014366:354000:3575413575413587311191Gamma proteobacterium HdN1, complete genomePredicted flavoprotein2e-113409
NC_014836:1052214:1066108106610810672891182Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein8e-112404
NC_015572:1974000:1980684198068419818741191Methylomonas methanica MC09 chromosome, complete genomehypothetical protein5e-111401
NC_014375:217612:2216972216972228871191Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeHI0933 family protein4e-99361
NC_016625:1259778:1279763127976312809891227Burkholderia sp. YI23 chromosome 2, complete sequencehypothetical protein6e-98357
NC_010611:797351:8179448179448191431200Acinetobacter baumannii ACICU, complete genomepredicted flavoprotein6e-97354
NC_017162:827567:8486458486458498441200Acinetobacter baumannii 1656-2 chromosome, complete genomeflavoprotein6e-97354
NC_017387:832000:8518848518848530831200Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeoxidoreductase6e-97354
NC_017171:825994:8465868465868478511266Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeoxidoreductase1e-96353
NC_014532:1191267:1192631119263111938061176Halomonas elongata DSM 2581, complete genomeK070072e-96353
NC_009085:893601:9146959146959158941200Acinetobacter baumannii ATCC 17978, complete genomeputative oxidoreductase2e-96352
NC_015856:1182974:1205369120536912065651197Collimonas fungivorans Ter331 chromosome, complete genomeNAD(FAD)-utilizing dehydrogenase7e-96351
NC_016603:23756:4434444344455431200Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeputative oxidoreductase with FAD/NAD(P)-binding domain5e-95348
NC_009075:2428248:2442089244208924433121224Burkholderia pseudomallei 668 chromosome II, complete sequenceFAD-dependent oxidoreductase5e-94345
NC_009078:2351046:2364882236488223661051224Burkholderia pseudomallei 1106a chromosome II, complete sequenceFAD-dependent oxidoreductase5e-94344
NC_007435:1077792:1094753109475310959761224Burkholderia pseudomallei 1710b chromosome II, complete sequenceconserved hypothetical protein TIGR002755e-94344
NC_006351:2398403:2412243241224324134661224Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein5e-94344
NC_012721:1986436:2010116201011620113331218Burkholderia glumae BGR1 chromosome 2, complete genomeFAD-dependent oxidoreductase1e-93343
NC_010552:752007:7520077520077532241218Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceHI0933 family protein2e-92339
NC_009255:1071868:1071868107186810730881221Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein6e-92338
NC_005966:715591:7373117373117385071197Acinetobacter sp. ADP1, complete genomeputative oxidoreductase with FAD/NAD(P)-binding domain2e-91336
NC_008686:1180388:1195187119518711963951209Paracoccus denitrificans PD1222 chromosome 1, complete sequenceHI0933 family protein4e-90332
NC_010805:530876:5308765308765320961221Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein2e-89329
NC_009484:2660048:2660048266004826612201173Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein3e-88325
NC_009850:413093:4170924170924181981107Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein8e-48191
NC_017187:387735:3947333947333958391107Arcobacter butzleri ED-1, complete genomehypothetical protein4e-47189
NC_011832:913994:9585319585319597571227Candidatus Methanosphaerula palustris E1-9c, complete genomeHI0933 family protein2e-46186
NC_019978:1410041:1414922141492214161481227Halobacteroides halobius DSM 5150, complete genomeflavoprotein, HI0933 family2e-44179
NC_011134:311360:3113603113603125321173Streptococcus equi subsp. zooepidemicus str. MGCS10565, completeNAD(FAD)-utilizing dehydrogenase2e-44179
NC_010516:3903867:3926054392605439272831230Clostridium botulinum B1 str. Okra, complete genomepyridine nucleotide-disulphide oxidoreductase family protein4e-44179
NC_012658:3923546:3945756394575639469851230Clostridium botulinum Ba4 str. 657 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase family protein4e-44179
NC_009699:3940984:3963179396317939644081230Clostridium botulinum F str. Langeland chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase family protein8e-44178
NC_017297:3939328:3960874396087439621031230Clostridium botulinum F str. 230613 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase family protein8e-44178
NC_010520:3938490:3960694396069439619231230Clostridium botulinum A3 str. Loch Maree, complete genomepyridine nucleotide-disulphide oxidoreductase family protein6e-44178
NC_009698:3706154:3728345372834537295741230Clostridium botulinum A str. Hall chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase1e-43177
NC_009697:3809044:3831235383123538324641230Clostridium botulinum A str. ATCC 19397 chromosome, completepyridine nucleotide-disulfide oxidoreductase family protein1e-43177
NC_009495:3832500:3854701385470138559301230Clostridium botulinum A str. ATCC 3502 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase1e-43177
NC_019903:2806466:2826378282637828276221245Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,flavoprotein4e-43175
NC_012926:140000:1711631711631723381176Streptococcus suis BM407 chromosome, complete genomehypothetical protein6e-42172
NC_014328:4546390:4566470456647045676991230Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative flavoprotein2e-41170
NC_016935:517054:5361005361005373651266Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein4e-40166
NC_004193:2342528:2346590234659023478551266Oceanobacillus iheyensis HTE831, complete genomehypothetical protein8e-39161
NC_021182:2667408:2688893268889326901101218Clostridium pasteurianum BC1, complete genomeflavoprotein, HI0933 family2e-38160
NC_006582:2944237:2993867299386729951291263Bacillus clausii KSM-K16, complete genomeflavoprotein4e-38159
NC_007622:1751500:1755071175507117563391269Staphylococcus aureus RF122, complete genomeprobable exported protein3e-37156
NC_017337:1829840:1834937183493718362051269Staphylococcus aureus subsp. aureus ED133 chromosome, completeexported protein6e-37155
NC_010079:1871915:1877273187727318785411269Staphylococcus aureus subsp. aureus USA300_TCH1516, completepossible flavoprotein7e-37155
NC_007793:1871165:1876523187652318777911269Staphylococcus aureus subsp. aureus USA300, complete genomehypothetical protein7e-37155
NC_017343:1748620:1753786175378617550541269Staphylococcus aureus subsp. aureus ECT-R 2, complete genomepyridine nucleotide-disulfide oxidoreductase family protein8e-37154
NC_013450:1825010:1830176183017618314441269Staphylococcus aureus subsp. aureus ED98, complete genomehypothetical protein8e-37154
NC_009632:1927372:1930571193057119318391269Staphylococcus aureus subsp. aureus JH1 chromosome, completehypothetical protein8e-37154
NC_009487:1925645:1930697193069719319651269Staphylococcus aureus subsp. aureus JH9 chromosome, completehypothetical protein8e-37154
NC_002745:1804000:1807575180757518088431269Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein8e-37154
NC_017338:1830790:1833988183398818352561269Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeputative flavoprotein1e-36154
NC_003923:1841500:1845376184537618466441269Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein8e-37154
NC_002951:1848684:1854212185421218554801269Staphylococcus aureus subsp. aureus COL, complete genomehypothetical protein8e-37154
NC_002953:1819411:1824712182471218259801269Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein8e-37154
NC_007795:1774725:1780197178019717814651269Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein8e-37154
NC_009641:1833000:1837053183705318383211269Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein8e-37154
NC_016912:1732354:1737826173782617390941269Staphylococcus aureus subsp. aureus VC40 chromosome, completehypothetical protein8e-37154
NC_017341:1851972:1857293185729318585611269Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative flavoprotein8e-37154
NC_017347:1852500:1856447185644718577151269Staphylococcus aureus subsp. aureus T0131 chromosome, completeflavoprotein8e-37154
NC_017351:1869287:1874100187410018753681269Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeNAD(FAD)-utilizing dehydrogenase8e-37154
NC_009051:2365711:2367267236726723684991233Methanoculleus marisnigri JR1, complete genomeHI0933 family protein2e-36153
NC_016941:1774000:1777279177727917785501272Staphylococcus aureus subsp. aureus MSHR1132, complete genomehypothetical protein1e-35151
NC_017342:1462297:1474535147453514758031269Staphylococcus aureus subsp. aureus TCH60 chromosome, completepyridine nucleotide-disulfide oxidoreductase1e-35150
NC_002952:1917999:1922810192281019240781269Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein6e-35148
NC_002976:1361364:1363987136398713652491263Staphylococcus epidermidis RP62A, complete genomehypothetical protein1e-34147
NC_004461:1465397:1468020146802014692821263Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein1e-34147
NC_007759:2179000:2216104221610422174051302Syntrophus aciditrophicus SB, complete genomeNAD(FAD)-utilizing dehydrogenases2e-34146
NC_008312:6072000:6072050607205060732911242Trichodesmium erythraeum IMS101, complete genomeHI0933-like protein1e-33144
NC_020387:149890:1535821535821547661185Dehalococcoides mccartyi BTF08, complete genomeflavoprotein, HI0933 family9e-34144
NC_007356:202131:2031142031142042531140Dehalococcoides sp. CBDB1, complete genomehypothetical protein8e-34144
NC_007168:1167454:1187667118766711889171251Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein7e-33141
NC_016609:5802000:5802799580279958040431245Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein4e-32139
NC_015425:34861:3486134861361051245Clostridium botulinum BKT015925 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase family protein8e-32138
NC_020164:1037979:1056475105647510577371263Staphylococcus warneri SG1, complete genomeNAD(FAD)-utilizing dehydrogenase3e-31136
NC_015703:4655488:4675888467588846771381251Runella slithyformis DSM 19594 chromosome, complete genomehypothetical protein7e-31135
NC_017192:1841987:1860206186020618614441239Arcobacter sp. L, complete genomehypothetical protein8e-30131
NC_011060:1334836:1341636134163613430091374Pelodictyon phaeoclathratiforme BU-1, complete genomeHI0933 family protein2e-29130
NC_017187:2037988:2039097203909720403261230Arcobacter butzleri ED-1, complete genomehypothetical protein1e-28127
NC_016928:1843597:184918118491811850149969Staphylococcus aureus subsp. aureus M013 chromosome, completeNAD(FAD)-utilizing dehydrogenase2e-27124
NC_009782:1881722:188688818868881887790903Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein1e-22107
NC_002758:1880323:188548918854891886391903Staphylococcus aureus subsp. aureus Mu50, complete genomeprobable NAD(FAD)-utilizing dehydrogenase1e-22107
NC_008819:679320:6964376964376976601224Prochlorococcus marinus str. NATL1A, complete genomehypothetical protein1e-21104
NC_007335:117572:1336661336661348831218Prochlorococcus marinus str. NATL2A, complete genomehypothetical protein3e-21103
NC_009782:1881722:188776518877651888037273Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein2e-0653.9
NC_002758:1880323:188636618863661886638273Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-0653.9