Pre_GI: BLASTP Hits

Some Help

Query: NC_016822:3923908:3931081 Shigella sonnei 53G, complete genome

Start: 3931081, End: 3932688, Length: 1608

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3897000:3904253390425339058601608Shigella sonnei Ss046, complete genomehypothetical protein01048
NC_017328:3625000:3632213363221336339161704Shigella flexneri 2002017 chromosome, complete genomehypothetical protein0964
NC_004337:3590323:3597496359749635992711776Shigella flexneri 2a str. 301, complete genomehypothetical protein0962
NC_008258:3550500:3557907355790735596821776Shigella flexneri 5 str. 8401, complete genomehypothetical protein0959
CP002185:3822470:3828519382851938301081590Escherichia coli W, complete genome0932
NC_010498:3838419:3844468384446838461201653Escherichia coli SMS-3-5, complete genomehypothetical protein0927
NC_011751:4074586:4080635408063540823081674Escherichia coli UMN026 chromosome, complete genomehypothetical protein0926
NC_013941:4249871:4255920425592042575931674Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0825
NC_012967:3549880:3563540356354035651471608Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein0822
NC_012947:248000:2760292760292776361608Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein0822
NC_004741:4160500:4174918417491841761081191Shigella flexneri 2a str. 2457T, complete genome0691
NC_011748:3958572:3965159396515939662441086Escherichia coli 55989, complete genome0676
CU928145:3958572:3965159396515939662441086Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 1)0676
NC_000913:3624826:3631243363124336324811239Escherichia coli K12, complete genomehypothetical protein0648
AC_000091:3995233:4005957400595740071951239Escherichia coli W3110 DNA, complete genomehypothetical protein0648
NC_010473:3722571:3728620372862037302261607Escherichia coli str. K-12 substr. DH10B, complete genome0647
NC_007613:3470314:3477052347705234780651014Shigella boydii Sb227, complete genomehypothetical protein0641
NC_004741:4160500:417615441761544176507354Shigella flexneri 2a str. 2457T, complete genome2e-62240
NC_013941:4249871:4254036425403642556581623Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-58226
NC_012947:248000:2778982778982795201623Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-57223
NC_012967:3549880:3561656356165635632781623Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-57223
NC_010473:3722571:3726736372673637283581623Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein3e-57223
AC_000091:3995233:4007825400782540094471623Escherichia coli W3110 DNA, complete genomehypothetical protein3e-57223
NC_000913:3624826:3628991362899136306131623Escherichia coli K12, complete genomehypothetical protein3e-57223
NC_008258:3550500:3556023355602335576451623Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-57223
NC_004741:4160500:4176769417676941783911623Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-57223
NC_004337:3590323:3595612359561235972341623Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-57223
NC_017328:3625000:3630329363032936319511623Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-57223
NC_016822:3923908:3929197392919739308191623Shigella sonnei 53G, complete genomehypothetical protein5e-57222
NC_007384:3897000:3902369390236939039911623Shigella sonnei Ss046, complete genomehypothetical protein5e-57222
CP002185:3822470:3826635382663538282571623Escherichia coli W, complete genomeconserved hypothetical protein1e-56221
NC_011751:4074586:4078751407875140803731623Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-56221
NC_011748:3958572:3962737396273739640891353Escherichia coli 55989, complete genome3e-56220
CU928145:3958572:3962737396273739640891353Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 2)3e-56220
NC_010498:3838419:3842584384258438442061623Escherichia coli SMS-3-5, complete genomehypothetical protein7e-52205
CU928145:3958572:396462039646203965012393Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 2)2e-38160
NC_011748:3958572:396462039646203965012393Escherichia coli 55989, complete genome2e-38160
NC_000913:3624826:363087536308753631267393Escherichia coli K12, complete genomehypothetical protein1e-37158
AC_000091:3995233:400717140071714007563393Escherichia coli W3110 DNA, complete genome1e-37158
NC_007613:3470314:3475777347577734767901014Shigella boydii Sb227, complete genomehypothetical protein4e-33142