Pre_GI: BLASTP Hits

Some Help

Query: NC_016822:3282654:3298161 Shigella sonnei 53G, complete genome

Start: 3298161, End: 3298619, Length: 459

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:3474077:3487149348714934885251377Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator2e-85313
NC_000913:2975659:2990116299011629914921377Escherichia coli K12, complete genomepredictedtranscriptional regulator3e-85313
CU928145:3196173:3209247320924732106231377Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator3e-85313
NC_009801:3175714:3188788318878831901641377Escherichia coli E24377A, complete genometranscriptional regulatory protein, C terminal3e-85313
CU928160:3030324:3043398304339830447741377Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator3e-85313
NC_010473:3069529:3083986308398630853621377Escherichia coli str. K-12 substr. DH10B, complete genomepredictedtranscriptional regulator3e-85313
AC_000091:2976293:2990750299075029921261377Escherichia coli W3110 DNA, complete genomepredictedtranscriptional regulator3e-85313
NC_011748:3196173:3209247320924732106231377Escherichia coli 55989, complete genometranscriptional regulator3e-85313
NC_009800:2995958:3010649301064930120251377Escherichia coli HS, complete genometranscriptional regulatory protein, C terminal3e-85313
NC_010468:906957:9269989269989283741377Escherichia coli ATCC 8739, complete genometranscriptional regulator, CadC3e-85313
NC_011415:3217796:3230870323087032322461377Escherichia coli SE11 chromosome, complete genometranscriptional regulator3e-85313
NC_011741:3030324:3043398304339830447741377Escherichia coli IAI1 chromosome, complete genometranscriptional regulator3e-85313
NC_012759:2862807:2877264287726428786401377Escherichia coli BW2952 chromosome, complete genometranscriptional regulator3e-85313
CP002185:3167738:3182195318219531835711377Escherichia coli W, complete genomeputative invasion genes regulator2e-85313
CP002516:903241:9225059225059238811377Escherichia coli KO11, complete genometranscriptional regulator, CadC2e-85313
NC_016902:903241:9225059225059238811377Escherichia coli KO11FL chromosome, complete genometranscriptional regulator CadC2e-85313
AP010958:3474077:3487149348714934885251377Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator2e-85313
NC_013364:3552284:3565364356536435667401377Escherichia coli O111:H- str. 11128, complete genomeputative transcriptional regulator4e-85312
NC_013361:3867558:3880632388063238820081377Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional regulator4e-85312
NC_013008:3761467:3773857377385737752331377Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranscriptional regulator1e-83308
NC_011353:3805819:3819131381913138205071377Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator1e-83308
NC_002655:3769643:3782034378203437834101377Escherichia coli O157:H7 EDL933, complete genomeputative invasion protein1e-83308
NC_002695:3702344:3714734371473437161101377Escherichia coli O157:H7 str. Sakai, complete genomeputative invasion protein1e-83308
NC_011750:3407500:3420871342087134222471377Escherichia coli IAI39 chromosome, complete genometranscriptional regulator7e-83305
NC_011751:3285646:3298960329896033003361377Escherichia coli UMN026 chromosome, complete genometranscriptional regulator2e-82303
NC_013941:3540420:355280935528093553099291Escherichia coli O55:H7 str. CB9615 chromosome, complete genome3e-46183
NC_011751:4293966:4306667430666743083641698Escherichia coli UMN026 chromosome, complete genomeinvasion protein regulator2e-22104
NC_011750:4390000:4424887442488744265841698Escherichia coli IAI39 chromosome, complete genomeinvasion protein regulator2e-22104
NC_010067:84093:9297192971946321662Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-1992.8
NC_011147:2814664:2829938282993828315991662Salmonella enterica subsp. enterica serovar Paratyphi A strinvasion protein regulator1e-1892
NC_003197:3005842:3019856301985630215171662Salmonella typhimurium LT2, complete genomeinvasion protein transcriptional activator1e-1892
NC_011083:2980356:2994370299437029960311662Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator HilA1e-1892
NC_011149:2912219:2928382292838229300431662Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator HilA1e-1892
NC_011080:2982346:2996360299636029980211662Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator HilA1e-1892
NC_006905:2960260:2973384297338429750451662Salmonella enterica subsp. enterica serovar Choleraesuis strinvasion genes transcription activator1e-1892
NC_006511:2819128:2834402283440228360631662Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCinvasion protein regulator1e-1892
NC_010102:2967464:2982838298283829844991662Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1892
NC_011205:3050235:3064247306424730659141668Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853invasion protein regulator1e-1892
NC_011274:2881306:2895320289532028969811662Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91invasion protein regulator1e-1892
NC_011294:2890500:2904516290451629061771662Salmonella enterica subsp. enterica serovar Enteritidis strinvasion protein regulator1e-1892
NC_011094:2913500:2927061292706129287221662Salmonella enterica subsp. enterica serovar Schwarzengrund strinvasion protein regulator1e-1892
NC_017046:3027161:3041172304117230428331662Salmonella enterica subsp. enterica serovar Typhimurium str. 798invasion protein regulator1e-1892
NC_016863:2974333:2988346298834629900071662Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1invasion protein regulator1e-1892
NC_016860:3029272:3043286304328630449471662Salmonella enterica subsp. enterica serovar Typhimurium strinvasion protein regulator1e-1892
NC_016857:3028421:3042432304243230440931662Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Transcriptional regulator hilA1e-1892
NC_016856:3026426:3040093304009330417541662Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sinvasion protein regulator1e-1892
NC_016831:2867766:2881779288177928834401662Salmonella enterica subsp. enterica serovar Gallinarum/pulloruminvasion protein regulator1e-1892
NC_016810:3028421:3042432304243230440931662Salmonella enterica subsp. enterica serovar Typhimurium strinvasion protein regulator1e-1892
NC_012125:2938519:2953767295376729554281662Salmonella enterica subsp. enterica serovar Paratyphi C straininvasion protein regulator1e-1892
NC_016832:2829767:2845022284502228466831662Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Transcriptional regulator hilA1e-1891.7
NC_004631:2842453:2857723285772328593841662Salmonella enterica subsp. enterica serovar Typhi Ty2, completeinvasion protein regulator1e-1891.7
NC_003198:2856596:2871866287186628735271662Salmonella enterica subsp. enterica serovar Typhi str. CT18,invasion protein regulator1e-1891.7
NC_015761:2726000:2740109274010927417701662Salmonella bongori NCTC 12419, complete genomeinvasion protein regulator8e-1889.4
NC_009348:4011160:402346340234634024095633Aeromonas salmonicida subsp. salmonicida A449, complete genometwo-component response regulator1e-0652