Pre_GI: BLASTP Hits

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Query: NC_016822:3065426:3089040 Shigella sonnei 53G, complete genome

Start: 3089040, End: 3089339, Length: 300

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:2998326:302307430230743023373300Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator5e-41166
CP002185:2919752:294332629433262943625300Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator6e-41166
AC_000091:2747520:279586727958672796166300Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator6e-41166
NC_000913:2746886:279523327952332795532300Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator6e-41166
AP010958:3238742:325973632597363260035300Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA-binding transcriptional regulator6e-41166
NC_010473:2839902:288699828869982887297300Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator6e-41166
NC_011750:2928990:296474729647472965046300Escherichia coli IAI39 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-41166
CU928160:2818750:284212028421202842419300Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-41166
NC_007384:2933625:295687629568762957175300Shigella sonnei Ss046, complete genomehypothetical protein6e-41166
NC_011741:2818750:284212028421202842419300Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-41166
NC_013364:3339768:336082533608253361124300Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator6e-41166
NC_013361:3651150:367565136756513675950300Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator6e-41166
NC_013353:3238742:325973632597363260035300Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator6e-41166
NC_012967:2669182:269196426919642692263300Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-41166
NC_012759:2633949:268104526810452681344300Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-41166
NC_011742:2863316:288440828844082884707300Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional regulator6e-41166
NC_010498:2847359:287082628708262871125300Escherichia coli SMS-3-5, complete genomeArsR family transcriptional regulator2e-40164
NC_020260:2725201:272573927257392726044306Cronobacter sakazakii Sp291, complete genomeArsR family transcriptional regulator3e-24110
NC_013282:1256769:125646212564621256803342Cronobacter turicensis, complete genomeProbable HTH-type transcriptional regulator ygaV4e-24109
NC_012779:2664849:267885526788552679163309Edwardsiella ictaluri 93-146, complete genometranscriptional regulator, ArsR family1e-23108
NC_014842:19411:347253472535042318Pantoea sp. At-9b plasmid pPAT9B05, complete sequencetranscriptional regulator, ArsR family2e-23107
NC_017047:3793000:379994237999423800259318Rahnella aquatilis HX2 chromosome, complete genomeregulatory protein ArsR1e-22105
NC_015061:3725921:373534737353473735598252Rahnella sp. Y9602 chromosome, complete genomeregulatory protein ArsR2e-22104
NC_004347:3670145:369180336918033692099297Shewanella oneidensis MR-1, complete genometranscriptional regulator HlyU1e-1271.6
NC_008322:3585601:360746036074603607756297Shewanella sp. MR-7, complete genometranscriptional regulator, ArsR family1e-1271.6
NC_015572:293665:296443296443296754312Methylomonas methanica MC09 chromosome, complete genomeregulatory protein ArsR7e-1269.3
NC_012988:670101:681019681019681360342Methylobacterium extorquens DM4, complete genomeAsrR family transcriptional regulator2e-1167.4
NC_012808:1220378:126010612601061260429324Methylobacterium extorquens AM1, complete genometranscriptional regulator, ArsR family6e-1166.2
NC_017059:1727095:174161317416131742194582Rhodospirillum photometricum DSM 122, complete genomeArsR family transcriptional regulator protein6e-1166.2
NC_015633:2565753:256899325689932569307315Vibrio anguillarum 775 chromosome chromosome I, complete sequenceHlyU1e-1065.1
NC_013851:3392644:341428834142883414653366Allochromatium vinosum DSM 180 chromosome, complete genometranscriptional regulator, ArsR family2e-1064.3
NC_013851:3166969:317024431702443170582339Allochromatium vinosum DSM 180 chromosome, complete genometranscriptional regulator, ArsR family3e-1063.9
NC_015424:3890293:391242239124223912724303Aeromonas veronii B565 chromosome, complete genometranscription activator HlyU2e-0961.6
NC_015388:2211828:223330822333082233595288Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeregulatory protein ArsR2e-0961.2
NC_008260:2961291:298309829830982983415318Alcanivorax borkumensis SK2, complete genomeTranscriptional regulator, ArsR family, putative4e-0856.6
NC_015684:1343251:134785813478581348256399Oligotropha carboxidovorans OM5 chromosome, complete genomeArsR family transcriptional regulator6e-0856.2
NC_011386:2762886:277622727762272776571345Oligotropha carboxidovorans OM5, complete genomeregulatory protein, ArsR6e-0856.2
NC_012560:4929683:495081049508104951133324Azotobacter vinelandii DJ, complete genomeBacterial regulatory protein, ArsR family1e-0755.5
NC_021150:4929670:495079749507974951120324Azotobacter vinelandii CA6, complete genomeArsR family regulatory protein1e-0755.5
NC_016616:1336000:133618313361831336509327Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator2e-0754.7
NC_008789:707916:726020726020726676657Halorhodospira halophila SL1, complete genomeRhodanese domain protein8e-0752.4
NC_008313:2142397:215636821563682156706339Ralstonia eutropha H16 chromosome 1, complete sequencetranscriptional regulator, ArsR-family1e-0652
NC_002678:7004370:701810970181097018495387Mesorhizobium loti MAFF303099, complete genometranscriptional regulator, similar to nodulatio protein nolR3e-0650.4