Pre_GI: BLASTP Hits

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Query: NC_016822:3065426:3088699 Shigella sonnei 53G, complete genome

Start: 3088699, End: 3088857, Length: 159

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:3339768:336048433604843360642159Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-21101
NC_000913:2746886:279489227948922795050159Escherichia coli K12, complete genomepredicted membrane protein2e-21101
NC_011750:2928990:296440629644062964564159Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-21101
CU928160:2818750:284177928417792841937159Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative membrane protein2e-21101
NC_010473:2839902:288665728866572886815159Escherichia coli str. K-12 substr. DH10B, complete genomepredicted membrane protein2e-21101
NC_010498:2847359:287048528704852870643159Escherichia coli SMS-3-5, complete genomehypothetical protein2e-21101
AC_000091:2747520:279552627955262795684159Escherichia coli W3110 DNA, complete genomepredicted membrane protein2e-21101
AP010958:3238742:325939532593953259553159Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted membrane protein2e-21101
CP002185:2919752:294298529429852943143159Escherichia coli W, complete genomepredicted membrane protein2e-21101
NC_011601:2998326:302273330227333022891159Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomemembrane protein2e-21101
NC_011741:2818750:284177928417792841937159Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-21101
NC_011742:2863316:288406728840672884225159Escherichia coli S88 chromosome, complete genomehypothetical protein2e-21101
NC_012759:2633949:268070426807042680862159Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-21101
NC_012967:2669182:269162326916232691781159Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-21101
NC_013353:3238742:325939532593953259553159Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-21101
NC_013361:3651150:367531036753103675468159Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-21101
NC_007384:2933625:295653529565352956693159Shigella sonnei Ss046, complete genomehypothetical protein2e-21101
NC_004741:2741971:276406527640652764223159Shigella flexneri 2a str. 2457T, complete genomehypothetical protein3e-21100
NC_020063:2230000:225506422550642255222159Enterobacteriaceae bacterium strain FGI 57, complete genomeputative Blt101-like protein2e-2097.4
NC_014839:253961:292117292117292275159Pantoea sp. At-9b plasmid pPAT9B02, complete sequencehypothetical protein3e-1993.6
NC_014500:1862000:191065019106501910817168Dickeya dadantii 3937 chromosome, complete genomehypothetical protein2e-1787.4
NC_015566:2957956:296813729681372968295159Serratia sp. AS12 chromosome, complete genomehypothetical protein1e-1581.6
NC_013421:3237633:324221332422133242380168Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function UPF00577e-1372.4
NC_009778:567000:568654568654568950297Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1270.1
NC_020260:603796:605577605577605735159Cronobacter sakazakii Sp291, complete genomehypothetical protein6e-1269.3
NC_007519:1782067:181095218109521811110159Desulfovibrio alaskensis G20 chromosome, complete genomePmp3 family protein1e-0962
NC_012997:4491871:451278945127894512947159Teredinibacter turnerae T7901, complete genomehypothetical protein6e-0959.7
NC_012912:2901021:291034229103422910515174Dickeya zeae Ech1591, complete genomeprotein of unknown function UPF00574e-0857
NC_013960:1587761:160028016002801600438159Nitrosococcus halophilus Nc4 chromosome, complete genomeprotein of unknown function UPF00571e-0755.1
NC_019940:1670262:167351116735111673684174Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein1e-0651.6
NC_011894:3797500:381137238113723811533162Methylobacterium nodulans ORS 2060, complete genomeprotein of unknown function UPF00571e-0651.6
NC_009439:4404942:442080444208044421028225Pseudomonas mendocina ymp, complete genomehypothetical protein3e-0650.4
NC_016745:1719800:172377717237771723935159Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein6e-0649.7
NC_000911:3075896:308434630843463084585240Synechocystis sp. PCC 6803, complete genomesalt-stress induced hydrophobic peptide8e-0649.3