Pre_GI: BLASTP Hits

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Query: NC_016822:3065426:3081738 Shigella sonnei 53G, complete genome

Start: 3081738, End: 3083006, Length: 1269

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2785309:2801357280135728026911335Shigella flexneri 2002017 chromosome, complete genomeFAD-dependent oxidoreductase0826
NC_004337:2747917:2762475276247527638091335Shigella flexneri 2a str. 301, complete genomehypothetical protein0826
NC_004741:2741971:2757111275711127584451335Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0826
NC_007384:2933625:2949592294959229509261335Shigella sonnei Ss046, complete genomehypothetical protein0825
NC_008258:2905413:2905413290541329066811269Shigella flexneri 5 str. 8401, complete genomehypothetical protein0825
NC_011601:2998326:3015846301584630171141269Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehydroxyglutarate oxidase0818
CP002516:1165726:1168491116849111697591269Escherichia coli KO11, complete genomeFAD dependent oxidoreductase0815
CP002185:2919752:2936098293609829373661269Escherichia coli W, complete genomepredicted enzyme0815
NC_016902:1165726:1168491116849111697591269Escherichia coli KO11FL chromosome, complete genomeFAD dependent oxidoreductase0815
NC_013361:3651150:3668349366834936696171269Escherichia coli O26:H11 str. 11368 chromosome, complete genomehydroxyglutarate oxidase0815
NC_013364:3339768:3353523335352333547911269Escherichia coli O111:H- str. 11128, complete genomeL-2-hydroxyglutarate oxidase0815
NC_010498:2847359:2863598286359828648661269Escherichia coli SMS-3-5, complete genomeFAD dependent oxidoreductase0814
NC_011750:2928990:2956084295608429573521269Escherichia coli IAI39 chromosome, complete genomehydroxyglutarate oxidase0814
NC_010468:1130000:1132920113292011341881269Escherichia coli ATCC 8739, complete genomeFAD dependent oxidoreductase0813
NC_002695:3468873:3512103351210335134371335Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0811
NC_012967:2669182:2684662268466226859301269Escherichia coli B str. REL606 chromosome, complete genomehydroxyglutarate oxidase0811
NC_012947:1106000:1108867110886711101351269Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehydroxyglutarate oxidase0811
NC_007946:2931364:2944775294477529461091335Escherichia coli UTI89, complete genomehypothetical protein YgaF0810
NC_013941:3300000:3349847334984733511811335Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0810
NC_008563:2946391:2959868295986829611361269Escherichia coli APEC O1, complete genomehypothetical protein0809
NC_011742:2863316:2877179287717928784471269Escherichia coli S88 chromosome, complete genomehydroxyglutarate oxidase0809
CU928160:2818750:2834818283481828360861269Escherichia coli IAI1 chromosome, complete genomeputative enzyme0809
NC_011415:3006794:3023999302399930252671269Escherichia coli SE11 chromosome, complete genomehydroxyglutarate oxidase0809
NC_011741:2818750:2834818283481828360861269Escherichia coli IAI1 chromosome, complete genomehydroxyglutarate oxidase0809
AC_000091:2747520:2788638278863827899061269Escherichia coli W3110 DNA, complete genomehypothetical protein0809
NC_010473:2839902:2879769287976928810371269Escherichia coli str. K-12 substr. DH10B, complete genomepredicted enzyme0809
NC_000913:2746886:2788004278800427892721269Escherichia coli K12, complete genomepredicted enzyme0809
NC_012759:2633949:2673816267381626750841269Escherichia coli BW2952 chromosome, complete genomehydroxyglutarate oxidase0809
NC_013353:3238742:3252507325250732537751269Escherichia coli O103:H2 str. 12009, complete genomeL-2-hydroxyglutarate oxidase0808
AP010958:3238742:3252507325250732537751269Escherichia coli O103:H2 str. 12009 DNA, complete genomeL-2-hydroxyglutarate oxidase0808
NC_002655:3538656:3579393357939335807271335Escherichia coli O157:H7 EDL933, complete genomehypothetical protein0805
NC_003197:2894344:2938844293884429401121269Salmonella typhimurium LT2, complete genomeputative sarcosine oxidase-like protein0734
NC_016856:2896630:2959079295907929603471269Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein0734
NC_016860:2917910:2962410296241029636781269Salmonella enterica subsp. enterica serovar Typhimurium strhydroxyglutarate oxidase0734
NC_016863:2844883:2907332290733229086001269Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hydroxyglutarate oxidase0734
NC_011149:2829811:2847305284730528485731269Salmonella enterica subsp. enterica serovar Agona str. SL483,putative FAD dependent oxidoreductase0733
NC_016832:2743801:2764895276489527661631269Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0733
NC_003198:2769449:2791739279173927930071269Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative GAB DTP gene cluster repressor0733
NC_004631:2755306:2777596277759627788641269Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative GAB DTP gene cluster repressor0733
NC_006905:2857699:2893527289352728947951269Salmonella enterica subsp. enterica serovar Choleraesuis strparal putative sarcosine oxidase-like protein0731
NC_011083:2847318:2913355291335529146231269Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative FAD dependent oxidoreductase0731
NC_012125:2826624:2874058287405828753261269Salmonella enterica subsp. enterica serovar Paratyphi C strainhydroxyglutarate oxidase0731
NC_011205:2962270:2983538298353829848061269Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hydroxyglutarate oxidase0731
NC_016810:2943912:2961420296142029626881269Salmonella enterica subsp. enterica serovar Typhimurium strputative GAB DTP gene cluster repressor0731
NC_016857:2943912:2961420296142029626881269Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hydroxyglutarate oxidase0731
NC_017046:2943929:2960160296016029614281269Salmonella enterica subsp. enterica serovar Typhimurium str. 798GAB DTP gene cluster repressor0731
NC_011294:2802502:2823772282377228250401269Salmonella enterica subsp. enterica serovar Enteritidis strhydroxyglutarate oxidase0729
NC_011094:2791719:2845970284597028472381269Salmonella enterica subsp. enterica serovar Schwarzengrund strhydroxyglutarate oxidase0729
NC_010102:2881714:2902987290298729042551269Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0725
NC_011080:2897977:2915485291548529167531269Salmonella enterica subsp. enterica serovar Newport str. SL254,putative FAD dependent oxidoreductase0724
NC_007963:2232000:2252805225280522540821278Chromohalobacter salexigens DSM 3043, complete genomeFAD dependent oxidoreductase5e-156550
NC_004632:28470:3349733497346931197Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,hypothetical protein2e-112405
NC_007275:1:1577515775169711197Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completehypothetical protein3e-112405
NC_009667:1371924:1371924137192413731531230Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehydroxyglutarate oxidase1e-106387
NC_019748:1634954:1651844165184416530281185Stanieria cyanosphaera PCC 7437, complete genomeFAD dependent oxidoreductase3e-100365
NC_019745:3217552:3218378321837832195951218Gloeocapsa sp. PCC 7428, complete genomeFAD dependent oxidoreductase3e-98358
NC_016582:6999074:7020206702020670214111206Streptomyces bingchenggensis BCW-1 chromosome, complete genomehydroxyglutarate oxidase2e-89329
NC_015957:336500:3561493561493573631215Streptomyces violaceusniger Tu 4113 chromosome, complete genomeFAD dependent oxidoreductase3e-88325
NC_006510:2044347:2051152205115220523481197Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-87322
NC_016943:1314500:1333612133361213348081197Blastococcus saxobsidens DD2, complete genomeputative FAD dependent oxidoreductase4e-85315
NC_016111:3577572:3592206359220635934381233Streptomyces cattleya NRRL 8057, complete genomehypothetical protein3e-82306
NC_013093:125363:1275501275501287371188Actinosynnema mirum DSM 43827, complete genomeFAD dependent oxidoreductase3e-80299
NC_014166:1179335:1181884118188411830711188Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeFAD dependent oxidoreductase1e-59230
NC_009850:661802:6742196742196753971179Arcobacter butzleri RM4018, complete genomeFAD-dependent oxidoreductase2e-51203
NC_014935:1223817:1264900126490012660901191Nitratifractor saLSUginis DSM 16511 chromosome, complete genomefad dependent oxidoreductase2e-48193
NC_010337:803748:8138588138588150601203Heliobacterium modesticaldum Ice1, complete genomefad dependent oxidoreductase8e-45181
NC_011146:2304475:2327581232758123287801200Geobacter bemidjiensis Bem, complete genomeFAD dependent oxidoreductase5e-36152
NC_010085:351689:3673323673323686451314Nitrosopumilus maritimus SCM1, complete genomeFAD dependent oxidoreductase5e-33142
NC_008346:800500:8078718078718089591089Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeFAD dependent oxidoreductase2e-32140
NC_010723:1014334:1021805102180510232351431Clostridium botulinum E3 str. Alaska E43, complete genomeglycerol-3-phosphate dehydrogenase, glpa1e-31137
NC_014654:1802007:1809804180980418112791476Halanaerobium sp. 'sapolanicus' chromosome, complete genomeFAD dependent oxidoreductase3e-27123
NC_008593:2281896:2294825229482522962581434Clostridium novyi NT, complete genomeglycerol-3-phosphate dehydrogenase8e-27121
NC_015425:2528549:2545129254512925465621434Clostridium botulinum BKT015925 chromosome, complete genomeFAD-dependent oxidoreductase8e-27121
NC_018607:2231975:2239133223913322405721440Brachyspira pilosicoli B2904 chromosome, complete genomeputative dehydrogenase2e-25117
NC_014330:888366:8954888954888969271440Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative dehydrogenase4e-25116
NC_019908:2312194:2323503232350323249421440Brachyspira pilosicoli P43/6/78 chromosome, complete genomedehydrogenase3e-25116
NC_014654:1:1797717977194551479Halanaerobium sp. 'sapolanicus' chromosome, complete genomeFAD dependent oxidoreductase4e-25115
NC_010321:562494:5701595701595716671509Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeFAD dependent oxidoreductase1e-24114
NC_014964:557910:5655755655755670831509Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeFAD dependent oxidoreductase1e-24114
NC_016026:997225:1000670100067010017791110Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein2e-24114
NC_012225:2247796:2256838225683822582771440Brachyspira hyodysenteriae WA1, complete genomePredicted dehydrogenase2e-24114
NC_018604:2350054:2357245235724523586841440Brachyspira pilosicoli WesB complete genomeputative dehydrogenase2e-24114
NC_017243:3093393:3102673310267331041121440Brachyspira intermedia PWS/A chromosome, complete genomedehydrogenase3e-24113
NC_019978:2036779:2044852204485220463841533Halobacteroides halobius DSM 5150, complete genomeputative dehydrogenase2e-23110
NC_014624:1675500:1723581172358117250681488Eubacterium limosum KIST612 chromosome, complete genomeglycerol-3-phosphate dehydrogenase7e-23108
NC_013171:312500:3265063265063279811476Anaerococcus prevotii DSM 20548, complete genomeFAD dependent oxidoreductase1e-20101
NC_007633:253143:2626392626392638021164Mycoplasma capricolum subsp. capricolum ATCC 27343, completeglycerol-3-phosphate dehydrogenase, putative3e-20100
NC_014751:302152:3108693108693120321164Mycoplasma leachii PG50 chromosome, complete genomeFAD dependent oxidoreductase3e-1996.7
NC_011295:246000:2614532614532629431491Coprothermobacter proteolyticus DSM 5265, complete genomeglycerol-3-phosphate dehydrogenase4e-1892.8
NC_000868:269923:2765982765982780911494Pyrococcus abyssi GE5, complete genomeglycerol-3-phosphate dehydrogenase9e-1891.7
NC_006624:1208464:1214304121430412157941491Thermococcus kodakarensis KOD1, complete genomeanaerobic glycerol 3-phosphate dehydrogenase9e-1891.7
NC_016114:648422:6833086833086847291422Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeFAD dependent oxidoreductase4e-1789.7
NC_003413:1847935:1854402185440218558921491Pyrococcus furiosus DSM 3638, complete genomeglycerol-3-phosphate dehydrogenase2e-1687.4
NC_014624:828943:8321588321588339211764Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-1480.9
NC_012883:695652:7036637036637054021740Thermococcus sibiricus MM 739, complete genomePredicted dehydrogenase2e-1480.9
NC_015757:1973925:197802719780271978341315Sulfobacillus acidophilus TPY chromosome, complete genomeFAD dependent oxidoreductase2e-1377.4
NC_010001:4128034:4152217415221741539471731Clostridium phytofermentans ISDg, complete genomeFAD dependent oxidoreductase5e-1375.9
NC_013850:2357608:2364005236400523654021398Klebsiella variicola At-22 chromosome, complete genomeFAD dependent oxidoreductase9e-1271.6
NC_008148:792610:7952117952117976492439Rubrobacter xylanophilus DSM 9941, complete genomeFAD dependent oxidoreductase1e-1068.2
NC_011901:2739984:2744081274408127454721392Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeFAD dependent oxidoreductase2e-1067.4
NC_008314:1275617:1280658128065812818241167Ralstonia eutropha H16 chromosome 2, complete sequenceFAD dependent oxidoreductase3e-1067
NC_007005:2686551:2707924270792427091081185Pseudomonas syringae pv. syringae B728a, complete genomeFAD dependent oxidoreductase3e-0963.2
NC_014393:19279:1927919279206761398Clostridium cellulovorans 743B chromosome, complete genomeFAD dependent oxidoreductase8e-0858.5
NC_011144:2674242:2691607269160726927881182Phenylobacterium zucineum HLK1, complete genomeFAD dependent oxidoreductase2e-0757.4
NC_012214:474359:4826684826684837291062Erwinia pyrifoliae Ep1/96, complete genomeFAD dependent oxidoreductase3e-0757
NC_017955:3057592:3064499306449930657191221Modestobacter marinus, complete genomesarcosine oxidase subunit beta6e-0652.4
NC_019973:5869500:5873692587369258761692478Mesorhizobium australicum WSM2073, complete genomeglycine cleavage system T protein (aminomethyltransferase)9e-0652
NC_014923:5940500:5944732594473259472092478Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeFAD dependent oxidoreductase9e-0652
NC_015675:6493444:6499403649940365018802478Mesorhizobium opportunistum WSM2075 chromosome, complete genomeFAD dependent oxidoreductase9e-0652