Pre_GI: BLASTP Hits

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Query: NC_016822:3065426:3065426 Shigella sonnei 53G, complete genome

Start: 3065426, End: 3065641, Length: 216

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:2933625:293412229341222934337216Shigella sonnei Ss046, complete genomelysis protein S3e-23107
NC_008258:2045000:206069020606902060905216Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-22102
CU928145:1773642:178378517837851784000216Escherichia coli 55989 chromosome, complete genomeputative phage lysis protein S; DLP12 prophage6e-2095.9
NC_011748:1773642:178378517837851784000216Escherichia coli 55989, complete genomeputative phage lysis protein S; DLP12 prophage6e-2095.9
NC_011415:1472500:149668814966881496903216Escherichia coli SE11 chromosome, complete genomeputative phage lysis protein7e-2095.9
NC_013941:699286:715501715501715761261Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-1994.7
NC_008563:1475500:148411114841111484413303Escherichia coli APEC O1, complete genomepredicted phage lysis protein2e-1994.7
NC_011740:2769961:277619327761932776408216Escherichia fergusonii ATCC 35469, complete genomeputative phage lysis protein S; DLP12 prophage2e-1994.4
NC_000913:558920:576621576621576836216Escherichia coli K12, complete genomeDLP12 prophage; predicted phage lysis protein3e-1994
NC_007946:1239278:125821312582131258428216Escherichia coli UTI89, complete genomehypothetical protein3e-1994
NC_011748:824367:838288838288838503216Escherichia coli 55989, complete genomeputative phage lysis protein S; DLP12 prophage3e-1994
NC_010473:498252:515953515953516168216Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted phage lysis protein3e-1994
NC_011751:643976:663073663073663288216Escherichia coli UMN026 chromosome, complete genomeputative phage lysis protein S; DLP12 prophage3e-1994
NC_010473:623810:629213629213629428216Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted phage lysis protein3e-1994
CU928145:824367:838288838288838503216Escherichia coli 55989 chromosome, complete genomeputative phage lysis protein S; DLP12 prophage3e-1994
AC_000091:558920:576621576621576836216Escherichia coli W3110 DNA, complete genomepredicted phage lysis protein3e-1994
NC_011742:1177946:119912211991221199337216Escherichia coli S88 chromosome, complete genomephage lysis protein S; DLP12 prophage3e-1994
NC_012759:461680:479381479381479596216Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative phage lysis protein3e-1994
NC_012947:3231893:323659732365973236812216Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLysis S family protein3e-1994
NC_012967:531000:548867548867549082216Escherichia coli B str. REL606 chromosome, complete genomeputative phage lysis protein3e-1994
NC_009778:1556222:157390915739091574124216Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1993.2
NC_020260:1615135:163281816328181633033216Cronobacter sakazakii Sp291, complete genomehypothetical protein8e-1992.4
NC_011748:1408280:142865314286531428946294Escherichia coli 55989, complete genome8e-1992.4
CU928145:1408280:142865314286531428946294Escherichia coli 55989 chromosome, complete genomefragment of Lysis protein S homolog from lambdoid prophage (partial)8e-1992.4
NC_013008:2910567:291561729156172915889273Escherichia coli O157:H7 str. TW14359 chromosome, complete genomelysis protein S of prophage CP-933V2e-1890.9
NC_011353:2957962:296074829607482960963216Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein5e-1889.7
NC_013364:2898964:290839429083942908609216Escherichia coli O111:H- str. 11128, complete genomeputative holin protein7e-1889.4
NC_013361:3112023:311844031184403118655216Escherichia coli O26:H11 str. 11368 chromosome, complete genomeholin protein7e-1889.4
NC_009436:2776410:281136728113672811582216Enterobacter sp. 638, complete genomelysis S family protein9e-1889
NC_002695:3468873:348388734838873484102216Escherichia coli O157:H7 str. Sakai, complete genomeholin protein1e-1788.2
NC_011353:3573641:358799535879953588210216Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-1788.2
NC_013941:5317424:532486953248695325084216Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeLysis protein S-like protein from lambdoid prophage Qin2e-1787.4
NC_002695:1929215:194399919439991944214216Escherichia coli O157:H7 str. Sakai, complete genomeputative holin protein3e-1787
NC_013008:3525428:354287235428723543186315Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeholin protein of prophage CP-933U3e-1787
NC_013361:1754346:175856317585631758778216Escherichia coli O26:H11 str. 11368 chromosome, complete genomeholin protein3e-1787
NC_011750:1565000:157255115725511572766216Escherichia coli IAI39 chromosome, complete genomeputative S lysis protein; Qin prophage3e-1787
CU928160:1668842:167839316783931678608216Escherichia coli IAI1 chromosome, complete genomeputative S lysis protein; Qin prophage3e-1787
AC_000091:1627049:164208416420841642299216Escherichia coli W3110 DNA, complete genomepredicted S lysis protein3e-1787
NC_011751:1859606:187028618702861870501216Escherichia coli UMN026 chromosome, complete genomeputative S lysis protein; Qin prophage3e-1787
NC_010473:1712984:172801917280191728234216Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted S lysis protein3e-1787
NC_010468:2265423:228221922822192282434216Escherichia coli ATCC 8739, complete genomeLysis S family protein3e-1787
NC_000913:1625500:163839416383941638609216Escherichia coli K12, complete genomeQin prophage; predicted S lysis protein3e-1787
NC_011741:1668842:167839316783931678608216Escherichia coli IAI1 chromosome, complete genomeputative S lysis protein; Qin prophage3e-1787
NC_012759:1517500:153045315304531530668216Escherichia coli BW2952 chromosome, complete genomeQin prophage; putative S lysis protein3e-1787
NC_013361:2138716:214944421494442149659216Escherichia coli O26:H11 str. 11368 chromosome, complete genomeholin protein3e-1787
NC_009800:1657550:166999516699951670210216Escherichia coli HS, complete genomelambda phage S protein family4e-1786.7
CP002185:1770815:178036517803651780571207Escherichia coli W, complete genomeQin prophage; predicted S lysis protein8e-1785.5
CP002516:2305659:232528523252852325491207Escherichia coli KO11, complete genomeLysis S family protein8e-1785.5
NC_016902:2305659:232528523252852325491207Escherichia coli KO11FL chromosome, complete genomeLysis S family protein8e-1785.5
NC_012947:2366000:237904823790482379260213Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLysis S family protein1e-1685.1
NC_016612:3803130:382558438255843825820237Klebsiella oxytoca KCTC 1686 chromosome, complete genomelysis S family protein3e-1684
NC_011740:4520373:452734445273444527559216Escherichia fergusonii ATCC 35469, complete genomeputative S lysis protein; Qin prophage5e-1683.2
NC_004431:3040953:305116530511653051380216Escherichia coli CFT073, complete genomeLysis protein S homolog from lambdoid prophage Qin5e-1683.2
NC_011742:4962008:496987549698754970090216Escherichia coli S88 chromosome, complete genomeS lysis protein; Qin prophage5e-1683.2
NC_009801:1756610:176139517613951761637243Escherichia coli E24377A, complete genomelysis protein S1e-1478.6
NC_007712:1997010:200896020089602009166207Sodalis glossinidius str. 'morsitans', complete genomeputative phage lysis protein9e-1062.4
NC_015663:4767443:477390347739034774127225Enterobacter aerogenes KCTC 2190 chromosome, complete genomelysis S family protein1e-0755.1
NC_012967:1403733:141670014167001416837138Escherichia coli B str. REL606 chromosome, complete genomeputative Lysozyme2e-0650.8