Pre_GI: BLASTP Hits

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Query: NC_016822:2940000:2941405 Shigella sonnei 53G, complete genome

Start: 2941405, End: 2941602, Length: 198

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2940000:295990729599072960308402Shigella sonnei 53G, complete genomehypothetical protein3e-31133
NC_009801:1756610:176096717609671761356390Escherichia coli E24377A, complete genomeIS66 family element, orf15e-31132
NC_009801:1392696:140961714096171410006390Escherichia coli E24377A, complete genomeIS66 family element, orf15e-31132
NC_009790:42112:671896718967578390Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element5e-31132
NC_013008:3525428:354178635417863542187402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-31132
NC_013008:1715831:172970317297031730104402Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase6e-31132
NC_002695:1364833:138386013838601384261402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-31132
NC_013008:4643825:464522546452254645605381Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc87e-31132
NC_002695:1794635:180913718091371809517381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein7e-31132
NC_002695:3468873:348280134828013483181381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein7e-31132
NC_009801:2898426:294035029403502940739390Escherichia coli E24377A, complete genomeIS66 family element, orf15e-31132
NC_009788:16360:182921829218681390Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS66 family element, orf15e-31132
NC_013361:1284579:130444313044431304844402Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-31132
NC_013353:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-31132
NC_013008:1307392:132773213277321328133402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-31132
NC_011745:333061:335652335652336053402Escherichia coli ED1a chromosome, complete genomeputative transposase, IS3 family4e-31132
NC_002655:4653160:465504246550424655443402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc8 within prophage CP-933L4e-31132
AP010958:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-31132
NC_002695:4584177:458605945860594586460402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-31132
NC_004431:3409389:342716934271693427570402Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage4e-31132
NC_002655:2264773:227763922776392278040402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc84e-31132
NC_010660:86445:950599505995448390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf13e-30130
NC_010660:33109:446374463745026390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf13e-30130
NC_009254:745706:763090763090763524435Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein2e-1374.7
NC_009255:1105786:111509111150911115525435Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-1374.7
NC_009256:2907998:291244329124432912877435Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase IS3/IS911 family protein2e-1374.7
NC_014539:888562:893145893145893561417Burkholderia sp. CCGE1003 chromosome 1, complete sequencetransposase IS3/IS911 family protein2e-1374.7
NC_007651:3064530:314390831439083144315408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:1620000:162740116274011627808408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:3560652:358535335853533585760408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:1620000:164485016448501645257408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:3064530:307232730723273072734408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:72952:833758337583782408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_007651:1620000:163739216373921637799408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein3e-1373.9
NC_016845:2274500:229580922958092296213405Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-1373.9
NC_007941:11319:331303313033534405Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein2e-1373.9
NC_004431:3409389:341047334104733410877405Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage2e-1373.9
NC_007951:4576825:458212245821224582559438Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase5e-1373.2
NC_011002:703194:719199719199719606408Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative transposase3e-1270.5
NC_007435:1446916:147844414784441478839396Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein2e-1168.2
NC_009078:2718741:275026927502692750664396Burkholderia pseudomallei 1106a chromosome II, complete sequenceTransposase1e-1168.2
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase1e-1065.5
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase1e-1065.1
NC_009254:442360:460991460991461386396Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein6e-1062.8
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein9e-1062.4
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf19e-1062.4
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf19e-1062.4
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein9e-1062.4
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A9e-1062.4
NC_009801:1756610:175854817585481759012465Escherichia coli E24377A, complete genomeIS66 family element, orf18e-1062.4
NC_009254:74000:939439394394362420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein1e-0961.6
NC_009254:637952:644979644979645398420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein2e-0961.2
NC_007510:1959883:200343920034392003855417Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS3/IS9113e-0960.5
NC_005241:157741:157424157424157744321Ralstonia eutropha H16 megaplasmid pHG1, complete sequencetransposition-related protein2e-0858.2
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein2e-0857.8
NC_015422:3184823:319825931982593198687429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-0754.7
NC_014910:1912552:192794719279471928375429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-0754.7
NC_015422:2858228:291509529150952915523429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-0754.7
NC_014910:1591003:159744815974481597876429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-0754.7
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein3e-0754.3
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase6e-0752.8
NC_012791:721813:725621725621726007387Variovorax paradoxus S110 chromosome 1, complete genometransposase IS3/IS911 family protein1e-0652
NC_014394:2577949:259843525984352598797363Gallionella capsiferriformans ES-2 chromosome, complete genometransposase IS3/IS911 family protein1e-0652
NC_013716:5201097:526588652658865266536651Citrobacter rodentium ICC168, complete genomeIS679 transposase A2e-0651.2
NC_003047:3360000:336349033634903363951462Sinorhizobium meliloti 1021, complete genomehypothetical protein5e-0649.7
AP010958:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein8e-0649.3
NC_011601:3338888:334114433411443341818675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6838e-0649.3
NC_013353:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein8e-0649.3
NC_013353:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein8e-0649.3
NC_011000:1262324:128276612827661283161396Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase6e-0649.3
NC_011001:302500:303100303100303495396Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transposase6e-0649.3
AP010958:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein8e-0649.3