Pre_GI: BLASTP Hits

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Query: NC_016822:2341127:2339853 Shigella sonnei 53G, complete genome

Start: 2339853, End: 2341130, Length: 1278

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:2251792:2250518225051822517951278Shigella sonnei Ss046, complete genomeputative nucleoside permease protein0803
NC_010473:2267851:2267851226785122691281278Escherichia coli str. K-12 substr. DH10B, complete genomepredicted nucleoside transporter0800
NC_010468:1694729:1714899171489917161761278Escherichia coli ATCC 8739, complete genomenucleoside transporter0800
CU928160:2239637:2238363223836322396401278Escherichia coli IAI1 chromosome, complete genomeputative hydrophilic substrate transporter; MFS superfamily0800
NC_011741:2239637:2238363223836322396401278Escherichia coli IAI1 chromosome, complete genomeputative hydrophilic substrate MFS superfamily transporter0800
NC_012759:2069326:2069326206932620706031278Escherichia coli BW2952 chromosome, complete genomeputative nucleoside transporter0800
NC_011750:955451:9761839761839774601278Escherichia coli IAI39 chromosome, complete genomeputative hydrophilic substrate transporter; MFS superfamily0797
CP002185:2347413:2347413234741323486901278Escherichia coli W, complete genomepredicted nucleoside transporter0795
NC_009792:642881:6599736599736612651293Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein0775
NC_003198:2179688:2201854220185422031251272Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative nucleoside permease0760
NC_004631:799810:8008118008118020821272Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative nucleoside permease0760
NC_011149:2179592:2201816220181622031321317Salmonella enterica subsp. enterica serovar Agona str. SL483,nucleoside transporter0759
NC_011147:792489:7934907934907947611272Salmonella enterica subsp. enterica serovar Paratyphi A strnucleoside permease0759
NC_006511:792543:7935447935447948151272Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative nucleoside permease0759
NC_006905:2235607:2258789225878922600601272Salmonella enterica subsp. enterica serovar Choleraesuis strputative MFS family transport protein0758
NC_016832:799764:8007658007658020361272Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,nucleoside transporter yegT0756
NC_014121:3483976:3485281348528134865581278Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein0744
NC_015968:3053565:3066293306629330675701278Enterobacter asburiae LF7a chromosome, complete genomenucleoside transporter0741
NC_015947:1142206:1163389116338911646061218Burkholderia sp. JV3 chromosome, complete genomenucleoside:H symporter2e-71269
NC_019892:3086493:3095192309519230964571266Singulisphaera acidiphila DSM 18658 chromosome, complete genomeNucleoside H+ symporter2e-71269
NC_011071:1178423:1199968119996812011851218Stenotrophomonas maltophilia R551-3, complete genomenucleoside:H symporter4e-69262
NC_014963:558000:5738395738395750861248Terriglobus saanensis SP1PR4 chromosome, complete genomenucleoside:H+ symporter8e-68258
NC_009436:1141376:1160925116092511621631239Enterobacter sp. 638, complete genomenucleoside:H+ symporter1e-63243
NC_016845:1407339:1408904140890414101091206Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative nucleoside H+ symporter7e-63241
NC_016612:2902628:2904155290415529053961242Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative nucleoside H+ symporter8e-62238
NC_006511:3079512:3080814308081430820701257Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnucleoside permease9e-43174
NC_011147:3075186:3076488307648830777441257Salmonella enterica subsp. enterica serovar Paratyphi A strnucleoside permease9e-43174
NC_011149:3187022:3188324318832431895801257Salmonella enterica subsp. enterica serovar Agona str. SL483,nucleoside permease NupG9e-43174
NC_016832:3100683:3101985310198531032411257Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Nucleoside permease nupG2e-42173
NC_003198:3126548:3127850312785031291061257Salmonella enterica subsp. enterica serovar Typhi str. CT18,nucleoside permease2e-42173
NC_004631:3112043:3113345311334531146011257Salmonella enterica subsp. enterica serovar Typhi Ty2, completenucleoside permease2e-42173
NC_010067:4418000:4441563444156344428191257Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-42173
NC_013716:5201097:5275326527532652765821257Citrobacter rodentium ICC168, complete genomenucleoside permease5e-42172
NC_009792:4017510:4018807401880740200631257Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-42172
NC_020418:1364943:1367269136726913685221254Morganella morganii subsp. morganii KT, complete genomeXanthosine permease6e-40165
NC_015663:3466471:3488800348880034900711272Enterobacter aerogenes KCTC 2190 chromosome, complete genomeProP protein1e-39164
NC_016845:4498097:4498097449809744993501254Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,nucleoside permease NupG1e-39164
NC_008253:3122148:3123432312343231246881257Escherichia coli 536, complete genomenucleoside permease NupG2e-38160
NC_019960:801589:8150618150618163111251Prevotella dentalis DSM 3688 chromosome 1, complete sequenceNucleoside H+ symporter9e-35148
NC_008345:3199965:3201469320146932026411173Shewanella frigidimarina NCIMB 400, complete genomemajor facilitator superfamily MFS_11e-0757.8
NC_015958:2527376:2546563254656325477291167Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomemajor facilitator superfamily protein3e-0757
NC_013851:2441407:2441407244140724425491143Allochromatium vinosum DSM 180 chromosome, complete genomemajor facilitator superfamily MFS_13e-0757
NC_011740:621408:6350626350626362011140Escherichia fergusonii ATCC 35469, complete genomeputative 3-phenylpropionic transporter7e-0652.4