Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2228850 Shigella sonnei 53G, complete genome

Start: 2228850, End: 2229902, Length: 1053

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:2083465:2090879209087920919311053Escherichia coli HS, complete genomehypothetical protein0719
CP002185:2181936:2203686220368622047381053Escherichia coli W, complete genome0708
NC_010468:1816359:1855013185501318560651053Escherichia coli ATCC 8739, complete genomeADP-heptose:LPS heptosyltransferase-like protein0706
NC_011601:2139188:2141521214152121425731053Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeADP-heptose: LPS heptosyltransferase0691
NC_011751:2327014:2351719235171923527711053Escherichia coli UMN026 chromosome, complete genomehypothetical protein0684
NC_011745:2209288:223033822303382231042705Escherichia coli ED1a chromosome, complete genome7e-137486
NC_000913:2042935:205064820506482051352705Escherichia coli K12, complete genome3e-136484
NC_011745:2209288:222999022299902230316327Escherichia coli ED1a chromosome, complete genome7e-57221
NC_000913:2042935:205030020503002050626327Escherichia coli K12, complete genome7e-57221
NC_003454:1889529:1903295190329519044341140Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeLOS biosynthesis enzyme LBGB6e-0858.9
NC_011027:1971580:1977317197731719783841068Chlorobaculum parvum NCIB 8327, complete genomeglycosyl transferase family 91e-0757.8