Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2208958 Shigella sonnei 53G, complete genome

Start: 2208958, End: 2209323, Length: 366

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:2248417:225108822510882251471384Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-65248
NC_009801:2159123:216270321627032163086384Escherichia coli E24377A, complete genomehypothetical protein1e-65248
NC_000913:2028472:203114320311432031508366Escherichia coli K12, complete genomepredicted inner membrane protein2e-65247
NC_010473:2119480:212215121221512122516366Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein2e-65247
CU928160:2091249:209482920948292095194366Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein2e-65247
AC_000091:2027648:203525620352562035621366Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein2e-65247
NC_011741:2091249:209482920948292095194366Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-65247
NC_012759:1920955:192362619236261923991366Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein2e-65247
NC_013364:2522888:252510825251082525473366Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-65247
NC_013941:2425233:242745324274532427818366Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-65247
NC_010498:1210145:122594912259491226251303Escherichia coli SMS-3-5, complete genomehypothetical protein7e-52202
CP002516:1902431:192094619209461921248303Escherichia coli KO11, complete genomehypothetical protein7e-52202
NC_012947:1769438:180391618039161804218303Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein7e-52202
NC_016902:1902431:192094619209461921248303Escherichia coli KO11FL chromosome, complete genomehypothetical protein7e-52202
NC_002695:2655445:265772126577212658047327Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-46183
NC_013008:2561586:256431325643132564621309Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeinner membrane protein3e-46183
NC_002655:2730659:273293527329352733243309Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-46183
NC_011353:2563056:256533225653322565577246Escherichia coli O157:H7 str. EC4115 chromosome, complete genome6e-33139
NC_011740:1991941:199408719940871994374288Escherichia fergusonii ATCC 35469, complete genomeputative inner membrane protein similar to yedR, putative permease4e-31132
NC_021066:601029:616195616195616476282Raoultella ornithinolytica B6, complete genomehypothetical protein8e-29125
NC_016612:5208936:521387552138755214156282Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative outer membrane protein N precursor2e-28124
NC_013716:2139952:214463621446362144923288Citrobacter rodentium ICC168, complete genomehypothetical protein5e-25113
NC_011283:1901229:191737519173751917656282Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein9e-25112
NC_015663:4906652:491132049113204911601282Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative outer membrane protein N4e-23106
NC_004631:948054:985960985960986271312Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-1994.4
NC_016810:2027311:203418820341882034487300Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1994.4
NC_016856:2085283:208802520880252088324300Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-1994.4
NC_016857:2027311:203418820341882034487300Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-1994.4
NC_016863:2029340:203621720362172036516300Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-1994.4
NC_011205:1227373:124221212422121242490279Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853outer membrane protein N4e-1889.7
NC_017046:2026672:203354920335492033815267Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-1788.6
NC_016832:948029:983668983668983946279Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane protein N1e-1788.2
NC_016831:1865681:186932018693201869598279Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-1788.2
NC_011149:1110642:112839811283981128676279Salmonella enterica subsp. enterica serovar Agona str. SL483,outer membrane protein N1e-1788.2