Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2204326 Shigella sonnei 53G, complete genome

Start: 2204326, End: 2205243, Length: 918

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012947:1769438:180797118079711808888918Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-135481
AC_000091:2027648:203058620305862031503918Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein2e-135481
NC_010498:1210145:123001012300101230921912Escherichia coli SMS-3-5, complete genomehypothetical protein3e-135481
NC_016902:1902431:192501019250101925927918Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-135481
CP002516:1902431:192501019250101925927918Escherichia coli KO11, complete genomeprotein of unknown function DUF8083e-135481
NC_013716:2139952:213995221399522140797846Citrobacter rodentium ICC168, complete genomehypothetical protein2e-119429
NC_015761:1970042:1972188197218819732491062Salmonella bongori NCTC 12419, complete genomeintegral membrane protein2e-119428
NC_011205:1227373:124630512463051247216912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein7e-119427
NC_017046:2026672:202881120288112029722912Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-118424
NC_016863:2029340:203147920314792032390912Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-118424
NC_016857:2027311:202945020294502030361912Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Inner membrane protein yedI4e-118424
NC_016810:2027311:202945020294502030361912Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-118424
NC_011283:1901229:192142719214271922338912Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein4e-113407
NC_021066:601029:620293620293621204912Raoultella ornithinolytica B6, complete genomehypothetical protein7e-111400
NC_016612:5208936:520919152091915210102912Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein7e-111400
NC_015663:4906652:490665249066524907563912Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-100365
NC_014562:1883517:188351718835171884428912Pantoea vagans C9-1 chromosome, complete genomeInner membrane protein yedI2e-96352
NC_014306:3006028:300602830060283006939912Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-93342
NC_008260:3053775:305792730579273058859933Alcanivorax borkumensis SK2, complete genomehypothetical protein8e-66250
NC_015637:325561:325561325561326472912Vibrio anguillarum 775 chromosome chromosome II, complete sequencehypothetical protein1e-63243
NC_013222:3060482:308416730841673085030864Robiginitalea biformata HTCC2501, complete genomehypothetical protein2e-47189
NC_013169:2045000:2057888205788820589881101Kytococcus sedentarius DSM 20547, complete genomehypothetical protein1e-38160
NC_017192:1841987:1871540187154018726521113Arcobacter sp. L, complete genomehypothetical protein1e-36153
NC_013441:27877:551235512356097975Gordonia bronchialis DSM 43247, complete genomeprotein of unknown function DUF8082e-33143
NC_013016:656000:657583657583658413831Neisseria meningitidis alpha14 chromosome, complete genomehypothetical protein7e-28124
NC_003112:744476:746054746054746809756Neisseria meningitidis MC58, complete genomehypothetical protein7e-28124
NC_015673:1794590:179792617979261798870945Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein6e-27121
NC_014391:4570567:4575483457548345765201038Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein6e-26118