Pre_GI: BLASTP Hits

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Query: NC_016822:1818897:1836973 Shigella sonnei 53G, complete genome

Start: 1836973, End: 1837653, Length: 681

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1737885:175898717589871759667681Shigella sonnei Ss046, complete genomecryptic nitrate reductase 2, gamma subunit1e-117422
NC_013941:1857724:185963718596371860317681Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrate reductase 2, gamma subunit7e-117419
NC_012759:1409086:142602014260201426700681Escherichia coli BW2952 chromosome, complete genomenitrate reductase 2 (NRZ), gamma subunit7e-117419
NC_010468:2406387:240707924070792407759681Escherichia coli ATCC 8739, complete genomerespiratory nitrate reductase, gamma subunit7e-117419
NC_002655:2015000:203262020326202033300681Escherichia coli O157:H7 EDL933, complete genomecryptic nitrate reductase 2, gamma subunit7e-117419
AC_000091:1521976:153765115376511538331681Escherichia coli W3110 DNA, complete genomenitrate reductase 2 (NRZ), gamma subunit7e-117419
NC_000913:1517051:153396115339611534641681Escherichia coli K12, complete genomenitrate reductase 2 (NRZ), gamma subunit7e-117419
NC_010473:1607646:162455616245561625236681Escherichia coli str. K-12 substr. DH10B, complete genomenitrate reductase 2 (NRZ), gamma subunit7e-117419
NC_007606:1515403:151609515160951516775681Shigella dysenteriae Sd197, complete genomecryptic nitrate reductase 2, gamma subunit1e-116419
NC_011751:1714131:173155117315511732231681Escherichia coli UMN026 chromosome, complete genomenitrate reductase 2 subunit gamma1e-115415
NC_010498:1700447:171737617173761718056681Escherichia coli SMS-3-5, complete genomerespiratory nitrate reductase 2, gamma subunit5e-99360
NC_011750:1809943:181091618109161811596681Escherichia coli IAI39 chromosome, complete genomenitrate reductase 2 (NRZ) subunit gamma1e-97355
NC_004431:1713141:173070517307051731385681Escherichia coli CFT073, complete genomeRespiratory nitrate reductase 2 gamma chain9e-97352
NC_011742:1528668:154666215466621547342681Escherichia coli S88 chromosome, complete genomenitrate reductase 2 (NRZ), gamma subunit2e-96352
NC_008563:1577879:159356915935691594249681Escherichia coli APEC O1, complete genomerespiratory nitrate reductase 2 gamma chain2e-96352
NC_007946:1586656:160465116046511605331681Escherichia coli UTI89, complete genomerespiratory nitrate reductase 2 gamma chain2e-96352
NC_011745:1581907:159785215978521598532681Escherichia coli ED1a chromosome, complete genomenitrate reductase 2 (NRZ) subunit gamma3e-96351
NC_013592:2059138:206518320651832065860678Dickeya dadantii Ech586, complete genomerespiratory nitrate reductase, gamma subunit2e-82305
NC_008322:2716676:273406827340682734751684Shewanella sp. MR-7, complete genomerespiratory nitrate reductase, gamma subunit7e-79293
NC_014500:2688095:270421827042182704895678Dickeya dadantii 3937 chromosome, complete genomenitrate reductase 1, gamma (cytochrome b(NR)) subunit4e-79293
NC_015968:2583721:260369426036942604371678Enterobacter asburiae LF7a chromosome, complete genomerespiratory nitrate reductase subunit gamma4e-78291
NC_008321:2649781:266610626661062666789684Shewanella sp. MR-4, complete genomerespiratory nitrate reductase, gamma subunit1e-77289
NC_016614:1152500:116010011601001160777678Vibrio sp. EJY3 chromosome 2, complete sequencerespiratory nitrate reductase subunit gamma1e-77289
NC_014532:2146466:216243621624362163113678Halomonas elongata DSM 2581, complete genomerespiratory nitrate reductase, subunit gamma2e-57222
NC_002516:4321000:433527643352764335959684Pseudomonas aeruginosa PAO1, complete genomerespiratory nitrate reductase gamma chain1e-52206
NC_008463:1188951:118969411896941190377684Pseudomonas aeruginosa UCBPP-PA14, complete genomerespiratory nitrate reductase gamma chain1e-52206
NC_013166:1409790:143064614306461431323678Kangiella koreensis DSM 16069, complete genomerespiratory nitrate reductase, gamma subunit2e-45181
NC_004461:2002000:200618120061812006858678Staphylococcus epidermidis ATCC 12228, complete genomenitrate reductase gamma chain2e-28125
NC_016941:2395502:239951623995162400193678Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative nitrate reductase gamma chain5e-28124
NC_013450:2463271:246647524664752467152678Staphylococcus aureus subsp. aureus ED98, complete genomerespiratory nitrate reductase, gamma subunit3e-27122
NC_002758:2515310:252094525209452521622678Staphylococcus aureus subsp. aureus Mu50, complete genomenitrate reductase gamma chain4e-27121
NC_002953:2435667:244250024425002443177678Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative nitrate reductase gamma chain4e-27121
NC_003923:2460130:246333424633342464011678Staphylococcus aureus subsp. aureus MW2, complete genomenitrate reductase gamma chain4e-27121
NC_009782:2519379:252258325225832523260678Staphylococcus aureus subsp. aureus Mu3, complete genomenitrate reductase gamma chain4e-27121
NC_002745:2446722:244992624499262450603678Staphylococcus aureus subsp. aureus N315, complete genomenitrate reductase gamma chain4e-27121
NC_009632:2545419:255105425510542551731678Staphylococcus aureus subsp. aureus JH1 chromosome, completerespiratory nitrate reductase subunit gamma4e-27121
NC_017343:2367177:237281223728122373489678Staphylococcus aureus subsp. aureus ECT-R 2, complete genomerespiratory nitrate reductase subunit gamma4e-27121
NC_007795:2455468:246110424611042461781678Staphylococcus aureus subsp. aureus NCTC 8325, complete genomerespiratory nitrate reductase, gamma subunit3e-27121
NC_002951:2448000:245043824504382451115678Staphylococcus aureus subsp. aureus COL, complete genomerespiratory nitrate reductase, gamma subunit3e-27121
NC_007793:2510801:251400525140052514682678Staphylococcus aureus subsp. aureus USA300, complete genomerespiratory nitrate reductase, gamma subunit3e-27121
NC_017351:2489460:249326324932632493940678Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerespiratory nitrate reductase subunit gamma3e-27121
NC_017342:857630:872953872953873630678Staphylococcus aureus subsp. aureus TCH60 chromosome, completerespiratory nitrate reductase subunit gamma3e-27121
NC_002952:2550500:255487425548742555551678Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative nitrate reductase gamma chain3e-27121
NC_017347:2511783:251498725149872515664678Staphylococcus aureus subsp. aureus T0131 chromosome, completeRespiratory nitrate reductase subunit gamma3e-27121
NC_017341:2544327:254753125475312548208678Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,respiratory nitrate reductase subunit gamma3e-27121
NC_016912:2329113:233231723323172332994678Staphylococcus aureus subsp. aureus VC40 chromosome, completerespiratory nitrate reductase subunit gamma3e-27121
NC_009641:2513300:251893625189362519613678Staphylococcus aureus subsp. aureus str. Newman chromosome,respiratory nitrate reductase, gamma subunit3e-27121
NC_010079:2510951:251415525141552514832678Staphylococcus aureus subsp. aureus USA300_TCH1516, completenitrate reductase gamma subunit3e-27121
NC_017338:2456000:245859424585942459271678Staphylococcus aureus subsp. aureus JKD6159 chromosome, completerespiratory nitrate reductase subunit gamma5e-27120
NC_017337:2478877:248297324829732483650678Staphylococcus aureus subsp. aureus ED133 chromosome, completenitrate reductase gamma chain5e-27120
NC_016928:2411486:241469024146902415367678Staphylococcus aureus subsp. aureus M013 chromosome, completerespiratory nitrate reductase subunit gamma5e-27120
NC_007622:2399347:240255024025502403227678Staphylococcus aureus RF122, complete genomenitrate reductase gamma chain5e-27120
NC_015850:1947000:198029719802971980995699Acidithiobacillus caldus SM-1 chromosome, complete genomeRespiratory nitrate reductase subunit gamma2e-26119
NC_017353:646195:659155659155659829675Staphylococcus lugdunensis N920143, complete genomeputative nitrate reductase gamma chain3e-26118
NC_007168:665284:680123680123680806684Staphylococcus haemolyticus JCSC1435, complete genomenitrate reductase gamma chain1e-24113
NC_012121:1894148:189565218956521896314663Staphylococcus carnosus subsp. carnosus TM300, complete genomeNarI protein2e-24112
NC_006322:1994000:201091320109132011599687Bacillus licheniformis ATCC 14580, complete genomeNarI1e-21103
NC_016887:3255500:327012432701243270861738Nocardia cyriacigeorgica GUH-2, complete genomeNitrate reductase gamma chain5e-2097.8
NC_009953:188000:212948212948213691744Salinispora arenicola CNS-205 chromosome, complete genomerespiratory nitrate reductase subunit gamma2e-1479.3
NC_009953:3552738:357447535744753575236762Salinispora arenicola CNS-205 chromosome, complete genomerespiratory nitrate reductase subunit gamma1e-1376.6
NC_003888:211748:212551212551213321771Streptomyces coelicolor A3(2), complete genomenitrate reductase delta chain NarI26e-1374.3
NC_014718:791528:794262794262794543282Burkholderia rhizoxinica HKI 454 chromosome, complete genomeRespiratory nitrate reductase gamma chain3e-1272
NC_007406:857625:867182867182867859678Nitrobacter winogradskyi Nb-255, complete genomenitrate reductase gamma subunit8e-1270.9
NC_016582:9422650:943004394300439430804762Streptomyces bingchenggensis BCW-1 chromosome, complete genomenitrate reductase gamma chain NarI35e-0754.7
NC_010814:190673:190673190673191341669Geobacter lovleyi SZ, complete genomerespiratory nitrate reductase, gamma subunit3e-0652