Pre_GI: BLASTP Hits

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Query: NC_016822:1818897:1820440 Shigella sonnei 53G, complete genome

Start: 1820440, End: 1822851, Length: 2412

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1737885:1741118174111817441653048Shigella sonnei Ss046, complete genomeformate dehydrogenase-N, nitrate-inducible, alpha subunit01617
NC_011750:1809943:1824581182458118276283048Escherichia coli IAI39 chromosome, complete genomeformate dehydrogenase-N subunit alpha, nitrate-inducible01617
NC_010498:1700447:1701344170134417043913048Escherichia coli SMS-3-5, complete genomeformate dehydrogenase, nitrate inducible, alpha subunit, selenocysteine-containing01617
NC_008258:1784637:1786180178618017892273048Shigella flexneri 5 str. 8401, complete genomeformate dehydrogenase-N, nitrate-inducible, alpha subunit01614
NC_004741:1823000:1824579182457918276263048Shigella flexneri 2a str. 2457T, complete genomeformate dehydrogenase-N, nitrate-inducible, alpha subunit01614
NC_002655:2015000:2016603201660320196503048Escherichia coli O157:H7 EDL933, complete genomeformate dehydrogenase-N, nitrate-inducible, alpha subunit [Escherichia coli]01613
NC_011353:1971145:1984059198405919864702412Escherichia coli O157:H7 str. EC4115 chromosome, complete genome01609
NC_010067:3538169:3556683355668335597333051Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01265
NC_012559:768939:7689397689397713592421Laribacter hongkongensis HLHK9, complete genomeFormate dehydrogenase-O, major subunit01147
NC_012912:2998511:3019863301986330229103048Dickeya zeae Ech1591, complete genomeformate dehydrogenase, alpha subunit01123
NC_015968:2110175:2120452212045221235053054Enterobacter asburiae LF7a chromosome, complete genomeformate dehydrogenase subunit alpha01101
NC_015723:1486000:1533231153323115363833153Cupriavidus necator N-1 chromosome 2, complete sequenceformate dehydrogenase subunit alpha01066
NC_014118:2316000:2338614233861423410432430Burkholderia sp. CCGE1002 chromosome chromosome 2, completeformate dehydrogenase, alpha subunit01028
NC_008027:558507:5773515773515798162466Pseudomonas entomophila L48, complete genomeFormate dehydrogenase-N major subunit, anaerobic; selenopeptide01005
NC_010322:583842:6080296080296104582430Pseudomonas putida GB-1 chromosome, complete genomeformate dehydrogenase subunit alpha01004
NC_011146:2614500:2635756263575626381642409Geobacter bemidjiensis Bem, complete genomeformate dehydrogenase, alpha subunit0718
NC_015499:1167932:1173693117369311766892997Thermodesulfobium narugense DSM 14796 chromosome, complete genomeformate dehydrogenase, alpha subunit3e-177622
NC_015499:1167932:1179342117934211817622421Thermodesulfobium narugense DSM 14796 chromosome, complete genomeNitrate reductase2e-173609
NC_014314:404315:4134404134404164393000Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeformate dehydrogenase subunit alpha4e-121436
NC_005090:1082213:1100292110029211031112820Wolinella succinogenes DSM 1740, complete genomeFORMATE DEHYDROGENASE LARGE SUBUNIT PRECURSOR2e-33144
NC_006138:3355028:3375583337558333784232841Desulfotalea psychrophila LSv54, complete genomeformate dehydrogenase, chain A1e-27125
NC_018664:1729794:1741071174107117437642694Clostridium acidurici 9a chromosome, complete genomeNADP-dependent formate dehydrogenase FdhA2e-27125
NC_013741:565389:5712745712745741442871Archaeoglobus profundus DSM 5631, complete genomemolybdopterin oxidoreductase3e-27124
NC_009943:970901:9867859867859883681584Candidatus Desulfococcus oleovorans Hxd3, complete genomemolybdopterin oxidoreductase2e-26121
NC_014541:1996811:1999529199952920036294101Ferrimonas balearica DSM 9799 chromosome, complete genomeformate dehydrogenase, alpha subunit8e-25116
NC_010505:3376322:3380193338019333831352943Methylobacterium radiotolerans JCM 2831, complete genomemolybdopterin oxidoreductase1e-24115
NC_018664:3073022:3076699307669930793472649Clostridium acidurici 9a chromosome, complete genomeformate dehydrogenase H3e-24114
NC_015474:1794879:1804735180473518067201986Pyrococcus sp. NA2 chromosome, complete genomeformate dehydrogenase alpha subunit related protein1e-23112
NC_015562:755785:7764957764957785732079Methanotorris igneus Kol 5 chromosome, complete genomeformate dehydrogenase subunit alpha1e-21105
NC_000916:1417981:1417981141798114205782598Methanothermobacter thermautotrophicus str. Delta H, completeformate dehydrogenase, alpha subunit homolog2e-21105
NC_013887:213699:2256862256862277612076Methanocaldococcus sp. FS406-22 chromosome, complete genomeformate dehydrogenase, alpha subunit4e-20100
NC_011892:77975:9437994379973452967Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeformate dehydrogenase, alpha subunit5e-1997.1
NC_012623:231603:2526082526082555472940Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeformate dehydrogenase subunit alpha3e-1894.7
NC_014973:3290545:3292430329243032952102781Geobacter sp. M18 chromosome, complete genomeformate dehydrogenase subunit alpha3e-1894.4
NC_013769:2405248:2405248240524824081872940Sulfolobus islandicus L.D.8.5 chromosome, complete genomeformate dehydrogenase subunit alpha3e-1894.4
NC_012588:2297497:2297497229749723004362940Sulfolobus islandicus M.14.25 chromosome, complete genomeformate dehydrogenase subunit alpha5e-1894
NC_012632:2390831:2390831239083123937702940Sulfolobus islandicus M.16.27 chromosome, complete genomeformate dehydrogenase subunit alpha7e-1893.2
NC_017187:1424371:1432206143220614344132208Arcobacter butzleri ED-1, complete genometruncated formate dehydrogenase alpha subunit7e-1893.2
NC_012726:2287880:2287880228788022908192940Sulfolobus islandicus M.16.4 chromosome, complete genomeformate dehydrogenase subunit alpha6e-1893.2
NC_009515:1409912:1428988142898814310962109Methanobrevibacter smithii ATCC 35061, complete genomeformate dehydrogenase, alpha subunit, FdhA9e-1892.8
NC_017096:1147441:1153853115385311565672715Caldisericum exile AZM16c01, complete genomeputative formate dehydrogenase subunit alpha2e-1791.7
NC_008149:3790897:3790897379089737930442148Yersinia pestis Nepal516, complete genomeformate dehydrogenase H2e-1791.7
NC_005810:515744:5336155336155357622148Yersinia pestis biovar Microtus str. 91001, complete genomeformate dehydrogenase H2e-1791.7
NC_009381:4169353:4169353416935341715002148Yersinia pestis Pestoides F chromosome, complete genomeformate dehydrogenase H2e-1791.7
NC_017154:331921:3489783489783511252148Yersinia pestis D106004 chromosome, complete genomeformate dehydrogenase H2e-1791.7
NC_017168:751078:7510787510787532252148Yersinia pestis A1122 chromosome, complete genomeformate dehydrogenase H2e-1791.7
NC_006155:456000:4741644741644763112148Yersinia pseudotuberculosis IP 32953, complete genomeformate dehydrogenase H3e-1791.3
NC_017275:2327479:2329948232994823328872940Sulfolobus islandicus HVE10/4 chromosome, complete genomeformate dehydrogenase subunit alpha8e-1789.7
NC_017276:2283933:2300214230021423031532940Sulfolobus islandicus REY15A chromosome, complete genomeformate dehydrogenase subunit alpha9e-1789.4
NC_014328:773095:7772567772567793852130Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeformate dehydrogenase subunit alpha1e-1689
NC_021182:1009526:1015852101585210179932142Clostridium pasteurianum BC1, complete genomeformate dehydrogenase, alpha subunit, archaeal-type2e-1688.6
NC_011830:1504497:1504497150449715071782682Desulfitobacterium hafniense DCB-2, complete genomeformate dehydrogenase, alpha subunit9e-1686.3
NC_014500:1646854:1673030167303016751802151Dickeya dadantii 3937 chromosome, complete genomeFormate dehydrogenase H2e-1584.7
NC_018644:910000:9117529117529145142763Alpha proteobacterium HIMB59 chromosome, complete genomeNAD-dependent formate dehydrogenase iron-sulfur catalytic subunit6e-1583.2
NC_012560:2315350:2330796233079623335012706Azotobacter vinelandii DJ, complete genomeassimilatory nitrate reductase, NasB4e-1480.9
NC_021150:2315362:2330808233080823335132706Azotobacter vinelandii CA6, complete genomeassimilatory nitrate reductase, NasB4e-1480.9
NC_013887:1383127:1388182138818213902182037Methanocaldococcus sp. FS406-22 chromosome, complete genomemolybdopterin oxidoreductase1e-1379
NC_020181:1653261:1654597165459716567472151Enterobacter aerogenes EA1509E, complete genomeFormate dehydrogenase H2e-1378.6
NC_015663:3742738:3761499376149937636492151Enterobacter aerogenes KCTC 2190 chromosome, complete genomeformate dehydrogenase subunit alpha2e-1378.2
NC_013421:801542:8166088166088208314224Pectobacterium wasabiae WPP163, complete genomemolybdopterin oxidoreductase4e-1377.4
NC_003106:91339:1035641035641064852922Sulfolobus tokodaii str. 7, complete genomehypothetical formate dehydrogenase alpha subunit5e-1377
NC_015578:1038588:1065082106508210672802199Treponema primitia ZAS-2 chromosome, complete genomeformate dehydrogenase subunit alpha6e-1376.6
NC_015957:8677395:8705383870538387077792397Streptomyces violaceusniger Tu 4113 chromosome, complete genomemolybdopterin oxidoreductase8e-1376.3
NC_010694:1932126:1948815194881519514812667Erwinia tasmaniensis, complete genomeNitrate reductase3e-1274.7
NC_016584:85543:1047891047891068702082Desulfosporosinus orientis DSM 765 chromosome, complete genomeanaerobic dehydrogenase5e-1273.9
NC_011830:4473583:4473583447358344760362454Desulfitobacterium hafniense DCB-2, complete genomemolybdopterin oxidoreductase1e-1172.4
NC_015318:426707:4346414346414374392799Hippea maritima DSM 10411 chromosome, complete genomemolybdopterin oxidoreductase6e-1170.1
NC_009376:832000:8434468434468469523507Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomemolybdopterin oxidoreductase6e-1170.1
NC_013967:827150:8477008477008497422043Haloferax volcanii DS2 chromosome, complete genomeformate dehydrogenase alpha subunit9e-1169.7
NC_014622:3525017:3536302353630235383892088Paenibacillus polymyxa SC2 chromosome, complete genomeassimilatory nitrate reductase catalytic subunit2e-1068.9
NC_012632:1212780:1217732121773212197051974Sulfolobus islandicus M.16.27 chromosome, complete genomeformate dehydrogenase subunit alpha4e-1067.8
NC_006270:2172693:2179278217927821815722295Bacillus licheniformis ATCC 14580, complete genomeFormate dehydrogenase, alpha subunit6e-1067
NC_016885:1217517:1230849123084912333022454Pyrobaculum oguniense TE7 chromosome, complete genomeanaerobic dehydrogenase1e-0966.2
NC_006322:2173500:2180124218012421831563033Bacillus licheniformis ATCC 14580, complete genomeYjgC2e-0965.5
NC_013730:140621:1552941552941576602367Spirosoma linguale DSM 74, complete genomemolybdopterin oxidoreductase2e-0965.1
NC_011830:4473583:4478844447884444813002457Desulfitobacterium hafniense DCB-2, complete genomemolybdopterin oxidoreductase2e-0965.1
NC_008146:3401743:3421292342129234251073816Mycobacterium sp. MCS, complete genomemolybdopterin oxidoreductase3e-0964.7
NC_008705:3430839:3449574344957434533893816Mycobacterium sp. KMS, complete genomemolybdopterin oxidoreductase3e-0964.7
NC_009077:3376351:3395111339511133989263816Mycobacterium sp. JLS, complete genomemolybdopterin oxidoreductase3e-0964.7
NC_018750:3315309:3323067332306733253792313Streptomyces venezuelae ATCC 10712, complete genomeAssimilatory nitrate reductase large subunit4e-0963.9
NC_007298:3764048:3764048376404837665612514Dechloromonas aromatica RCB, complete genomeTwin-arginine translocation pathway signal:Periplasmic nitrate reductase, large subunit7e-0963.2
NC_009943:1262000:1267973126797312704802508Candidatus Desulfococcus oleovorans Hxd3, complete genomemolydopterin dinucleotide-binding region8e-0963.2
NC_014323:3292082:3296449329644932992172769Herbaspirillum seropedicae SmR1 chromosome, complete genomeassimilatory nitrate reductase large subunit8e-0963.2
NC_009776:707785:7084417084417109452505Ignicoccus hospitalis KIN4/I, complete genomemolybdopterin oxidoreductase1e-0862.8
NC_019978:1244000:1249752124975212518302079Halobacteroides halobius DSM 5150, complete genomeputative anaerobic dehydrogenase1e-0862.4
NC_019791:1189908:1195724119572411983842661Caldisphaera lagunensis DSM 15908 chromosome, complete genomeformate dehydrogenase subunit alpha2e-0862
NC_013204:2826500:2873403287340328761322730Eggerthella lenta DSM 2243, complete genomemolybdopterin oxidoreductase2e-0862
NC_009376:794562:8174678174678206553189Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomemolybdopterin oxidoreductase2e-0862
NC_014829:988980:9975459975459997372193Bacillus cellulosilyticus DSM 2522 chromosome, complete genomemolybdopterin oxidoreductase2e-0862
NC_021184:1125000:1142623114262311451272505Desulfotomaculum gibsoniae DSM 7213, complete genomeanaerobic dehydrogenase, typically selenocysteine-containing2e-0862
NC_016584:3617439:3617439361743936195172079Desulfosporosinus orientis DSM 765 chromosome, complete genomeanaerobic dehydrogenase3e-0861.6
NC_006513:1379735:1393417139341713963472931Azoarcus sp. EbN1, complete genomealpha-subunit of ethylbenzene dehydrogenase2e-0861.6
NC_019940:1727384:1744669174466917475602892Thioflavicoccus mobilis 8321 chromosome, complete genomeanaerobic dehydrogenase5e-0860.5
NC_007912:2958000:2979615297961529817982184Saccharophagus degradans 2-40, complete genomenitrate reductase5e-0860.5
NC_017161:1012874:1015638101563810176562019Hydrogenobacter thermophilus TK-6 chromosome, complete genomemolybdopterin oxidoreductase8e-0860.1
NC_013799:1012884:1015648101564810176662019Hydrogenobacter thermophilus TK-6, complete genomeassimilatory nitrate reductase8e-0860.1
NC_010525:285805:3065823065823089992418Thermoproteus neutrophilus V24Sta, complete genomemolybdopterin oxidoreductase1e-0759.3
NC_008818:357993:3630773630773656502574Hyperthermus butylicus DSM 5456, complete genomeAnaerobic dehydrogenase, BisC2e-0758.5
NC_010162:11812211:1182595611825956118282292274Sorangium cellulosum 'So ce 56', complete genomenitrate reductase2e-0758.5
NC_017080:2379551:2402220240222024043552136Phycisphaera mikurensis NBRC 102666, complete genomenitrate reductase2e-0758.2
NC_013959:156991:1765171765171791652649Sideroxydans lithotrophicus ES-1 chromosome, complete genomemolybdopterin oxidoreductase3e-0758.2
NC_010814:1441327:1488489148848914906782190Geobacter lovleyi SZ, complete genomemolybdopterin oxidoreductase3e-0757.8
NC_007613:1533024:1533024153302415367473724Shigella boydii Sb227, complete genome3e-0757.8
NC_009800:1657550:1680204168020416826302427Escherichia coli HS, complete genomeanaerobic dimethyl sulfoxide reductase, A subunit YnfE4e-0757.4
NC_013850:2846069:2881662288166228840972436Klebsiella variicola At-22 chromosome, complete genomeanaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family4e-0757.4
NC_011283:2836000:2919294291929429217292436Klebsiella pneumoniae 342 chromosome, complete genomeanaerobic dimethyl sulfoxide reductase subunit A4e-0757.4
NC_015931:618445:6207796207796227401962Pyrolobus fumarii 1A, complete genomemolybdopterin oxidoreductase8e-0756.6
NC_011830:1288984:1304750130475013075932844Desulfitobacterium hafniense DCB-2, complete genomemolybdopterin oxidoreductase1e-0656.2
NC_007907:5185510:5240064524006452429072844Desulfitobacterium hafniense Y51, complete genomeputative anaerobic dehydrogenase1e-0655.8
NC_015589:3053504:3070271307027130718481578Desulfotomaculum ruminis DSM 2154 chromosome, complete genomemolybdopterin oxidoreductase1e-0655.8
NC_014314:212579:2125792125792152392661Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeformate dehydrogenase subunit alpha1e-0655.5
NC_007947:577315:5855275855275876562130Methylobacillus flagellatus KT, complete genomemolybdopterin oxidoreductase2e-0655.1
NC_013859:421500:4342054342054368442640Azospirillum sp. B510 plasmid pAB510e, complete sequencenitrate reductase catalytic subunit2e-0655.1
NC_003888:7561923:7582309758230975846392331Streptomyces coelicolor A3(2), complete genomeoxidoreductase3e-0654.7
NC_010730:1211506:1229547122954712327683222Sulfurihydrogenibium sp. YO3AOP1, complete genomemolybdopterin oxidoreductase3e-0654.7
NC_011094:1050700:1053832105383210562762445Salmonella enterica subsp. enterica serovar Schwarzengrund stranaerobic dimethyl sulfoxide reductase subunit A4e-0654.3
NC_003366:2057656:2075625207562520777032079Clostridium perfringens str. 13, complete genomenitrate reductase catalytic subunit4e-0653.9
NC_008262:1950205:1964940196494019670182079Clostridium perfringens SM101, complete genomenitrate reductase, catalytic subunit4e-0653.9
NC_015738:1858455:1866770186677018696132844Eggerthella sp. YY7918, complete genomeanaerobic dehydrogenase7e-0653.1
NC_011979:537862:5419635419635444492487Geobacter sp. FRC-32, complete genomemolybdopterin oxidoreductase8e-0653.1