Pre_GI: BLASTP Hits

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Query: NC_016822:1818897:1818897 Shigella sonnei 53G, complete genome

Start: 1818897, End: 1819550, Length: 654

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_000918:707801:724841724841725476636Aquifex aeolicus VF5, complete genomeformate dehydrogenase gamma subunit5e-29127
NC_015856:940625:964197964197964838642Collimonas fungivorans Ter331 chromosome, complete genomeformate dehydrogenase O subunit gamma1e-39162
NC_012912:2998511:301830830183083018949642Dickeya zeae Ech1591, complete genomeformate dehydrogenase, gamma subunit4e-82303
NC_015968:2110175:212439721243972125044648Enterobacter asburiae LF7a chromosome, complete genomeformate dehydrogenase subunit gamma9e-92335
NC_011750:1809943:182851818285181829171654Escherichia coli IAI39 chromosome, complete genomeformate dehydrogenase-N subunit gamma2e-103374
NC_002655:2015000:201506020150602015713654Escherichia coli O157:H7 EDL933, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit2e-103374
NC_011353:1971145:198736019873601988013654Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeformate dehydrogenase-N subunit gamma2e-103374
NC_002695:2056545:207276020727602073413654Escherichia coli O157:H7 str. Sakai, complete genomenitrate-inducible formate dehydrogenase-N cytochrome B556(Fdn) gamma subunit2e-103374
NC_013008:1971662:198633619863361986989654Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeformate dehydrogenase-N subunit gamma2e-103374
NC_013941:1857724:187722418772241877877654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeformate dehydrogenase-N gamma subunit2e-103374
NC_010498:1700447:169980116998011700454654Escherichia coli SMS-3-5, complete genomeformate dehydrogenase, gamma subunit2e-103374
NC_008825:1258500:1258512125851212596781167Methylibium petroleiphilum PM1, complete genomeformate dehydrogenase subunit C precursor3e-1272
NC_010505:3376322:3383838338383833848751038Methylobacterium radiotolerans JCM 2831, complete genomeformate dehydrogenase, gamma subunit2e-1168.9
NC_013960:1587761:1643214164321416442751062Nitrosococcus halophilus Nc4 chromosome, complete genomeformate dehydrogenase, gamma subunit7e-1477.4
NC_008027:558507:580763580763581419657Pseudomonas entomophila L48, complete genomeformate dehydrogenase-O, cytochrome B556 (FDO) subunit6e-41167
NC_010322:583842:611405611405612061657Pseudomonas putida GB-1 chromosome, complete genomeformate dehydrogenase subunit gamma3e-38158
NC_014311:1106871:1106871110687111080251155Ralstonia solanacearum PSI07 chromosome, complete genomeformate dehydrogenase, cytochrome b556(fdo) subunit (fdoI)4e-1168.2
NC_010067:3538169:356064535606453561280636Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-49196
NC_004347:103967:112631112631113272642Shewanella oneidensis MR-1, complete genomeformate dehydrogenase, nitrate-inducible, cytochrome b556 subunit1e-40166
NC_017328:1835108:183863318386331839286654Shigella flexneri 2002017 chromosome, complete genomeFormate dehydrogenase-N gamma subunit2e-103374
NC_004741:1823000:182303618230361823689654Shigella flexneri 2a str. 2457T, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit2e-103374
NC_004337:1783645:178531317853131785966654Shigella flexneri 2a str. 301, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit2e-103374
NC_008258:1784637:178463717846371785290654Shigella flexneri 5 str. 8401, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit2e-103374
NC_007384:1737885:173957517395751740228654Shigella sonnei Ss046, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit2e-103374
NC_015499:1167932:117791111779111178561651Thermodesulfobium narugense DSM 14796 chromosome, complete genomeformate dehydrogenase, gamma subunit6e-0754.3