Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1489857 Shigella sonnei 53G, complete genome

Start: 1489857, End: 1490408, Length: 552

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:2453078:245631524563152456866552Pectobacterium wasabiae WPP163, complete genomenitroreductase5e-65246
NC_017154:2430093:243009324300932430644552Yersinia pestis D106004 chromosome, complete genomenitroreductase7e-61233
NC_010159:2440947:245858124585812459132552Yersinia pestis Angola, complete genomenitroreductase family protein4e-61233
NC_010634:2376245:237825823782582378809552Yersinia pseudotuberculosis PB1/+, complete genomenitroreductase4e-61233
NC_005810:2180303:218231621823162182867552Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein4e-61233
NC_008150:1705152:170515217051521705703552Yersinia pestis Antiqua, complete genomeputative nitroreductase4e-61233
NC_003143:2433190:243319024331902433741552Yersinia pestis CO92, complete genomeputative nitroreductase4e-61233
NC_004088:2366000:238645123864512387002552Yersinia pestis KIM, complete genomehypothetical protein4e-61233
NC_017265:2087487:210816321081632108714552Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative oxidoreductase4e-61233
NC_009092:1989977:199066319906631991211549Shewanella loihica PV-4, complete genomenitroreductase8e-39159
NC_012913:626449:647868647868648422555Aggregatibacter aphrophilus NJ8700, complete genomeNfnB protein4e-32137
NC_003112:1685330:170128917012891701846558Neisseria meningitidis MC58, complete genomehypothetical protein1e-31135
NC_017518:1701958:172221517222151722772558Neisseria meningitidis NZ-05/33 chromosome, complete genomenitroreductase family protein2e-31134
NC_014366:1435785:145824214582421458802561Gamma proteobacterium HdN1, complete genomeNitroreductase family protein4e-29127
NC_010125:74904:788567885679497642Gluconacetobacter diazotrophicus PAl 5, complete genomeputative nitroreductase family protein2e-21102
NC_016027:1401500:141838814183881418975588Gluconacetobacter xylinus NBRC 3288, complete genomeoxidoreductase2e-1995.5
NC_009138:467268:480682480682481293612Herminiimonas arsenicoxydans, complete genomeconserved protein, nitroreductase domain9e-1993.2
NC_007912:1924392:192665619266561927219564Saccharophagus degradans 2-40, complete genomeconserved hypothetical protein XF20073e-1891.3
NC_013446:4511602:451160245116024512519918Comamonas testosteroni CNB-2, complete genomenitroreductase1e-1169.7
NC_014483:1973233:198879619887961989347552Paenibacillus polymyxa E681 chromosome, complete genomeNitroreductase3e-1065.1
NC_016599:513357:530590530590531180591Owenweeksia hongkongensis DSM 17368 chromosome, complete genomenitroreductase2e-0962
NC_010382:3350816:335664333566433357203561Lysinibacillus sphaericus C3-41, complete genomenitroreductase6e-0960.5
NC_006274:765870:771085771085771645561Bacillus cereus E33L, complete genomenitroreductase family protein3e-0858.2
NC_017208:823540:827099827099827659561Bacillus thuringiensis serovar chinensis CT-43 chromosome, completenitroreductase family protein2e-0755.5
NC_015172:1429266:143344614334461433952507Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomenitroreductase2e-0652
NC_011894:4013830:405609940560994056800702Methylobacterium nodulans ORS 2060, complete genomenitroreductase7e-0650.4