Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1476375 Shigella sonnei 53G, complete genome

Start: 1476375, End: 1476824, Length: 450

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3085000:309661430966143097060447Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-54209
NC_009778:2227627:224005922400592240448390Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-39159
NC_009348:2362163:237503423750342375492459Aeromonas salmonicida subsp. salmonicida A449, complete genomeautolysin2e-21101
NC_013960:979556:985405985405985821417Nitrosococcus halophilus Nc4 chromosome, complete genomeglycoside hydrolase family 249e-1062.4
NC_015677:3520524:352412335241233524566444Ramlibacter tataouinensis TTB310 chromosome, complete genomelysozyme, Glycoside Hydrolase Family 241e-0755.5
NC_013282:551219:553855553855554361507Cronobacter turicensis, complete genomeLysozyme2e-0754.7
NC_009138:2242470:226348022634802263923444Herminiimonas arsenicoxydans, complete genomeputative Lysozyme (Lysis protein) (Muramidase) (Endolysin)1e-0652
NC_010067:632683:650102650102650587486Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-0649.7