Pre_GI: BLASTP Hits

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Query: NC_016822:1339058:1339058 Shigella sonnei 53G, complete genome

Start: 1339058, End: 1339843, Length: 786

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1355060:135621713562171357002786Shigella sonnei Ss046, complete genomehypothetical protein4e-110397
NC_011741:1978500:200732320073232008108786Escherichia coli IAI1 chromosome, complete genomehigh-affinity zinc transporter membrane component1e-109395
CU928160:1978500:200732320073232008108786Escherichia coli IAI1 chromosome, complete genomezinc transporter subunit: membrane component of ABC superfamily1e-109395
NC_013364:2355298:238409023840902384875786Escherichia coli O111:H- str. 11128, complete genomezinc transporter subunit ZnuB3e-109394
NC_013361:2591829:262062026206202621405786Escherichia coli O26:H11 str. 11368 chromosome, complete genomehigh-affinity zinc transporter membrane protein3e-109394
NC_012913:280506:305824305824306609786Aggregatibacter aphrophilus NJ8700, complete genomehigh-affinity zinc uptake system membrane protein ZnuB1e-64246
NC_009439:4913767:493248049324804933268789Pseudomonas mendocina ymp, complete genomeABC-3 protein7e-47187
NC_012560:68251:871178711787905789Azotobacter vinelandii DJ, complete genomezinc ABC transporter, permease protein8e-42170
NC_021150:68251:871178711787905789Azotobacter vinelandii CA6, complete genomezinc ABC transporter, permease protein8e-42170
NC_013118:1109610:112836611283661129226861Brucella microti CCM 4915 chromosome 2, complete genomezinc ABC transporter, permease protein7e-40164
NC_015858:1150446:116898011689801169840861Brucella pinnipedialis B2/94 chromosome chromosome 2, completezinc ABC transporter permease7e-40164
NC_006933:1051873:107053910705391071399861Brucella abortus biovar 1 str. 9-941 chromosome II, completeZnuB, zinc ABC transporter, permease protein7e-40164
NC_010104:1096081:111485811148581115718861Brucella canis ATCC 23365 chromosome II, complete sequence29 kDa membrane protein in psaA 5'region7e-40164
NC_007624:1046500:106529510652951066155861Brucella melitensis biovar Abortus 2308 chromosome II, completeABC transporter, family 3:Sodium:dicarboxylate symporter7e-40164
NC_010740:1051000:106979610697961070656861Brucella abortus S19 chromosome 2, complete sequenceABC transporter, family 37e-40164
NC_010167:1287000:130905613090561309916861Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein7e-40164
NC_004311:1096649:111542711154271116287861Brucella suis 1330 chromosome II, complete sequencezinc ABC transporter, permease protein6e-40164
NC_003318:183914:183100183100183954855Brucella melitensis 16M chromosome II, complete sequenceHIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE PROTEIN ZNUB6e-40164
NC_009668:1591290:161036716103671611188822Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceABC-3 protein4e-40164
NC_018868:2615822:261977026197702620567798Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeABC zinc transporter permease ZnuB1e-35149
NC_018644:137755:167803167803168675873Alpha proteobacterium HIMB59 chromosome, complete genomeABC3 family transporter7e-33140
NC_005966:159232:175327175327176142816Acinetobacter sp. ADP1, complete genomehigh affinity Zn transport protein (ABC superfamily, membrane)4e-26118
NC_006831:821000:834396834396835196801Ehrlichia ruminantium str. Gardel, complete genomeHigh-affinity zinc uptake system membrane protein znuB4e-23108
NC_005295:845000:858634858634859434801Ehrlichia ruminantium str. Welgevonden, complete genomeputative ABC transporter, membrane-spanning protein5e-23108
NC_006832:825000:838511838511839311801Ehrlichia ruminantium str. Welgevonden, complete genomeHigh-affinity zinc uptake system membrane protein znuB5e-23108
NC_007797:411630:411630411630412424795Anaplasma phagocytophilum HZ, complete genomeABC 3 transport family protein5e-21101
NC_014248:4642149:466031746603174661186870Nostoc azollae 0708 chromosome, complete genomeABC-3 protein2e-1789.4
NC_015957:8845274:884721588472158848087873Streptomyces violaceusniger Tu 4113 chromosome, complete genomeABC transporter integral membrane subunit7e-1684.3
NC_007775:2546833:254927725492772550113837Synechococcus sp. JA-3-3Ab, complete genomemanganese/zinc/iron chelate ABC transporter (MZT) family, permease protein7e-1684.3
NC_010547:98330:975469754698361816Cyanothece sp. ATCC 51142 chromosome linear, complete sequenceABC transporter permease protein4e-1582
NC_020389:1346358:136693513669351367744810Methanosarcina mazei Tuc01, complete genomeZinc ABC transporter, inner membrane permease protein ZnuB4e-1478.6
NC_003901:1568000:159260715926071593431825Methanosarcina mazei Go1, complete genomeZinc ABC transporter, permease protein4e-1478.6
NC_013928:174500:190618190618191457840Streptococcus mutans NN2025, complete genomezinc ABC transporter permease1e-1377
NC_005070:2374850:238234623823462383176831Synechococcus sp. WH 8102, complete genomeABC transporter component, possibly Zn transport.2e-1376.3
NC_013410:3105121:310824631082463109052807Fibrobacter succinogenes subsp. succinogenes S85 chromosome,ABC transporter2e-1272.8
NC_013928:174500:176514176514177353840Streptococcus mutans NN2025, complete genomeMn/Zn ABC transporter3e-1272.4
NC_014972:210500:235606235606236472867Desulfobulbus propionicus DSM 2032 chromosome, complete genomeABC-3 protein3e-1272.4
NC_014721:434501:436026436026436841816Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeabc-3 protein3e-1272.4
NC_008319:1376938:137840013784001379236837Synechococcus sp. CC9311, complete genomemanganese/zinc/iron chelate ABC transporter (MZT) family, permease protein5e-1271.6
NC_016048:1390463:140777414077741408589816Oscillibacter valericigenes Sjm18-20, complete genomeABC transporter permease protein6e-1271.2
NC_017294:327433:327433327433328224792Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomehydrophobic membrane protein ZurM9e-1270.9
NC_018876:2151226:215122621512262152044819Methanolobus psychrophilus R15 chromosome, complete genomeABC transporter, inner membrane subunit7e-1167.8
NC_013171:497499:527823527823528617795Anaerococcus prevotii DSM 20548, complete genomeABC-3 protein1e-1067.4
NC_014820:1087153:109972210997221100555834Cenarchaeum symbiosum A, complete genomeABC-type Mn2 /Zn2 transport system, permease component2e-1065.9
NC_012997:2405500:240630024063002407166867Teredinibacter turnerae T7901, complete genomeABC-3 transporter component9e-1063.9
NC_014314:69872:698726987270729858Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeABC-3 protein1e-0963.5
NC_016641:4151403:415638241563824157230849Paenibacillus terrae HPL-003 chromosome, complete genomemanganese/zinc ABC transporter permease2e-0963.2
NC_008555:1874878:189870818987081899553846Listeria welshimeri serovar 6b str. SLCC5334, complete genomemanganese ABC transporter permease protein3e-0962.4
NC_013406:3975512:398574039857403986606867Paenibacillus sp. Y412MC10 chromosome, complete genomeABC-3 protein5e-0961.6
NC_011027:136954:157735157735158553819Chlorobaculum parvum NCIB 8327, complete genomeABC-3 protein9e-0960.8
NC_010545:619346:6357876357876374751689Corynebacterium urealyticum DSM 7109, complete genomeABC transport system, permease protein2e-0859.7
NC_013956:4627890:464796046479604648820861Pantoea ananatis LMG 20103 chromosome, complete genomeYfeC4e-0858.5
NC_013956:4627890:464881746488174649647831Pantoea ananatis LMG 20103 chromosome, complete genomeYfeD5e-0858.5
NC_002163:129800:143953143953144756804Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeABC transporter integral membrane protein1e-0757.4
NC_013515:347671:366474366474367367894Streptobacillus moniliformis DSM 12112, complete genomeABC-3 protein4e-0755.5
NC_008253:1228485:123001512300151230872858Escherichia coli 536, complete genomeiron transport protein, inner membrane component6e-0754.7
NC_011751:1446073:145316214531621454019858Escherichia coli UMN026 chromosome, complete genomeiron transport protein, inner membrane component6e-0754.7
NC_011745:1287714:129006112900611290918858Escherichia coli ED1a chromosome, complete genomeiron transporter inner membrane component6e-0754.7
NC_017079:2243451:226009322600932260908816Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeABC transporter permease8e-0754.3
NC_002937:1395977:141825714182571419081825Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completecation ABC transporter, permease protein1e-0653.9
NC_008563:1217804:122139712213971222254858Escherichia coli APEC O1, complete genomeABC Mn+2/Fe+2 transporter, inner membrane subunit SitC1e-0653.9
NC_004431:1443968:144756114475611448418858Escherichia coli CFT073, complete genomeSitC protein1e-0653.9
NC_011750:1978801:199627519962751997132858Escherichia coli IAI39 chromosome, complete genomeiron transporter inner membrane component1e-0653.9
NC_007946:1280508:128410112841011284958858Escherichia coli UTI89, complete genomeSitC protein1e-0653.9
NC_011742:1221416:122500912250091225866858Escherichia coli S88 chromosome, complete genomeiron transport protein, inner membrane component1e-0653.9
NC_014500:4049384:405312340531234053977855Dickeya dadantii 3937 chromosome, complete genomeZinc ABC transporter inner membrane permease ZnuB1e-0653.9
NC_008253:3941938:399038339903833991309927Escherichia coli 536, complete genomeputative ABC-transporter membrane protein2e-0653.5
NC_015761:2726000:272918627291862730034849Salmonella bongori NCTC 12419, complete genomeiron transport inner membrane protein2e-0653.5
NC_007513:1311957:132229713222971323073777Synechococcus sp. CC9902, complete genomeABC transporter component, possibly Mn transport1e-0653.5
NC_020181:527592:548688548688549494807Enterobacter aerogenes EA1509E, complete genomeManganese ABC transporter, inner membrane permease protein SitD2e-0653.1
NC_009792:923155:934600934600935427828Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0653.1
NC_012559:1301988:130198813019881302860873Laribacter hongkongensis HLHK9, complete genomemembrane protein2e-0653.1
NC_011083:2980356:298346529834652984313849Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,chelated iron transport system membrane protein YfeD2e-0652.8
NC_011274:2881306:288441528844152885263849Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91iron transport protein inner membrane protein2e-0652.8
NC_011294:2890500:289361028936102894458849Salmonella enterica subsp. enterica serovar Enteritidis strIron transport protein inner membrane protein2e-0652.8
NC_016831:2867766:287087528708752871723849Salmonella enterica subsp. enterica serovar Gallinarum/pullorumIron transport protein, inner membrane component2e-0652.8
NC_012125:2938519:294375329437532944601849Salmonella enterica subsp. enterica serovar Paratyphi C strainiron transport protein, inner membrane component4e-0652
NC_011205:3050235:305334430533443054192849Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chelated iron transport system membrane protein YfeD4e-0652
NC_011094:2913500:291614829161482916996849Salmonella enterica subsp. enterica serovar Schwarzengrund strchelated iron transport system membrane protein YfeD4e-0652
NC_010102:2967464:297282429728242973672849Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0652
NC_011080:2982346:298545529854552986303849Salmonella enterica subsp. enterica serovar Newport str. SL254,chelated iron transport system membrane protein YfeD4e-0652
NC_006905:2960260:296336929633692964217849Salmonella enterica subsp. enterica serovar Choleraesuis striron transporter: fur regulated4e-0652
NC_016832:2829767:283500128350012835849849Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-0652
NC_003198:2856596:286184528618452862693849Salmonella enterica subsp. enterica serovar Typhi str. CT18,Iron transport protein, inner membrane component4e-0652
NC_004631:2842453:284770228477022848550849Salmonella enterica subsp. enterica serovar Typhi Ty2, completeiron transport protein, inner membrane component4e-0652
NC_006511:2819128:282437728243772825225849Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCIron transport protein, inner membrane component4e-0652
NC_011147:2814664:281991328199132820761849Salmonella enterica subsp. enterica serovar Paratyphi A strIron transporter inner membrane protein4e-0652
NC_010067:84093:103823103823104671849Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-0652
NC_017046:3027161:303027030302703031118849Salmonella enterica subsp. enterica serovar Typhimurium str. 798iron transport protein, inner membrane component4e-0652
NC_016863:2974333:297744229774422978290849Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative permease4e-0652
NC_016860:3029272:303238130323813033229849Salmonella enterica subsp. enterica serovar Typhimurium strchelated iron ABC transporter permease protein YfeD4e-0652
NC_016857:3028421:303153030315303032378849Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative permease4e-0652
NC_016856:3026426:302918930291893030037849Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative permease4e-0652
NC_016810:3028421:303153030315303032378849Salmonella enterica subsp. enterica serovar Typhimurium strIron transport protein, inner membrane component4e-0652
NC_011149:2912219:291746829174682918316849Salmonella enterica subsp. enterica serovar Agona str. SL483,chelated iron transport system membrane protein YfeD4e-0652
NC_003197:3005842:300895130089513009799849Salmonella typhimurium LT2, complete genomeputative permease4e-0652
NC_010831:173499:194114194114194923810Chlorobium phaeobacteroides BS1, complete genomeABC-3 protein5e-0651.6
NC_015761:2726000:272833527283352729195861Salmonella bongori NCTC 12419, complete genomeiron transport inner membrane protein7e-0651.2
NC_015567:1127780:115426311542631155120858Serratia sp. AS9 chromosome, complete genomeABC transporter integral membrane protein9e-0650.8
NC_015566:1127595:115407811540781154935858Serratia sp. AS12 chromosome, complete genomeABC transporter integral membrane protein9e-0650.8