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Query: NC_016810:819489 Salmonella enterica subsp. enterica serovar Typhimurium str

Start: 819489, End: 838775, Length: 19287

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:815964*81596483952123558Salmonella typhimurium LT2, complete genome036730BLASTN svgBLASTP svg
NC_011149:779903*77990380318023278Salmonella enterica subsp. enterica serovar Agona str. SL483,035610BLASTN svgBLASTP svg
NC_011080:819103*81910384387224770Salmonella enterica subsp. enterica serovar Newport str. SL254,035190BLASTN svgBLASTP svg
NC_006905:848000*84800086575317754Salmonella enterica subsp. enterica serovar Choleraesuis str030820BLASTN svgBLASTP svg
NC_010102:2287934*2287934231106023127Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,029340BLASTN svgBLASTP svg
NC_011083:862901*86290188778924889Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,023180BLASTN svgBLASTP svg
NC_009648:838000*83800086209024091Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome03251BLASTN svgBLASTP svg
NC_013850:4612812*4612812463649923688Klebsiella variicola At-22 chromosome, complete genome03160BLASTN svgBLASTP svg
NC_010694:2565580*2565580259415428575Erwinia tasmaniensis, complete genome1e-103385BLASTN svgBLASTP svg
NC_013961:1246454*1246454127639829945Erwinia amylovora, complete genome1e-94355BLASTN svgBLASTP svg
NC_012214:2673058*2673058270161428557Erwinia pyrifoliae Ep1/96, complete genome6e-87329BLASTN svgBLASTP svg
NC_021150:201237*20123722409922863Azotobacter vinelandii CA6, complete genome1e-26129BLASTN svgBLASTP svg
NC_012560:201237*20123722409922863Azotobacter vinelandii DJ, complete genome1e-26129BLASTN svgBLASTP svg
NC_014935:1223817*1223817126609942283Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3e-24121BLASTN svgBLASTP svg
CP002185:2889656*2889656291209922444Escherichia coli W, complete genome4e-1487.7BLASTN svgBLASTP svg
CU928160:2785792*2785792280821622425Escherichia coli IAI1 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_012917:3565268*3565268359123425967Pectobacterium carotovorum subsp. carotovorum PC1, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_019940:13093591309359133197622618Thioflavicoccus mobilis 8321 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011146:38271938271941560632888Geobacter bemidjiensis Bem, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010501:4379920*4379920440315523236Pseudomonas putida W619, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004431:1211000*1211000123322222223Escherichia coli CFT073, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002516:1031386*1031386109196460579Pseudomonas aeruginosa PAO1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_005125:76072176072180474844028Gloeobacter violaceus PCC 7421, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome9e-0660BLASTN svgBLASTP svg
NC_011083:82465982465985295528297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,9e-0660BLASTN svgBLASTP svg
NC_011080:78085078085080915728308Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-0660BLASTN svgBLASTP svg
NC_003197:77623877623880454628309Salmonella typhimurium LT2, complete genome9e-0660BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-0660BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-0660BLASTN svgBLASTP svg