Pre_GI: BLASTN Hits

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Query: NC_016810:775649 Salmonella enterica subsp. enterica serovar Typhimurium str

Start: 775649, End: 803957, Length: 28309

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:77623877623880454628309Salmonella typhimurium LT2, complete genome054700BLASTN svgBLASTP svg
NC_011083:82465982465985295528297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,053410BLASTN svgBLASTP svg
NC_011080:78085078085080915728308Salmonella enterica subsp. enterica serovar Newport str. SL254,053350BLASTN svgBLASTP svg
NC_006511:20900582090058211818728130Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC045020BLASTN svgBLASTP svg
NC_010102:23228662322866235445731592Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,038070BLASTN svgBLASTP svg
NC_003198:75177975177977932827550Salmonella enterica subsp. enterica serovar Typhi str. CT18,021640BLASTN svgBLASTP svg
NC_004631:22058212205821223319827378Salmonella enterica subsp. enterica serovar Typhi Ty2, complete018200BLASTN svgBLASTP svg
NC_012779:2755338*2755338278000524668Edwardsiella ictaluri 93-146, complete genome0894BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome0769BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome0737BLASTN svgBLASTP svg
NC_010159:14179931417993144109923107Yersinia pestis Angola, complete genome0726BLASTN svgBLASTP svg
NC_008150:65089965089967359922701Yersinia pestis Antiqua, complete genome0726BLASTN svgBLASTP svg
NC_003143:12331281233128125981426687Yersinia pestis CO92, complete genome0726BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome0718BLASTN svgBLASTP svg
NC_004088:3382148*3382148340611023963Yersinia pestis KIM, complete genome5e-119436BLASTN svgBLASTP svg
NC_005810:11302511130251115417023920Yersinia pestis biovar Microtus str. 91001, complete genome5e-119436BLASTN svgBLASTP svg
NC_008149:3251196*3251196327595124756Yersinia pestis Nepal516, complete genome5e-119436BLASTN svgBLASTP svg
NC_015740:18453701845370186638521016Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete4e-58234BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome4e-58234BLASTN svgBLASTP svg
NC_007963:1370903*1370903139119320291Chromohalobacter salexigens DSM 3043, complete genome2e-57232BLASTN svgBLASTP svg
NC_009092:18748881874888191420239315Shewanella loihica PV-4, complete genome2e-54222BLASTN svgBLASTP svg
NC_020211:4168189*4168189419217623988Serratia marcescens WW4, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_005085:1096000*1096000111962323624Chromobacterium violaceum ATCC 12472, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012559:23095662309566233407924514Laribacter hongkongensis HLHK9, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_015563:47734154773415479788824474Delftia sp. Cs1-4 chromosome, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_014006:850763*85076390963758875Sphingobium japonicum UT26S chromosome 1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_011060:20992552099255213104831794Pelodictyon phaeoclathratiforme BU-1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014910:2015627*2015627203840722781Alicycliphilus denitrificans BC chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015061:19022511902251193341231162Rahnella sp. Y9602 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015663:44479844447984447024622263Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008781:19738261973826199696823143Polaromonas naphthalenivorans CJ2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010678:642769*64276966483622068Ralstonia pickettii 12J chromosome 2, complete sequence9e-1073.8BLASTN svgBLASTP svg
NC_013722:2810721*2810721284465133931Xanthomonas albilineans, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003198:27694492769449279300723559Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0867.9BLASTN svgBLASTP svg
NC_003198:38551573855157387914223986Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0867.9BLASTN svgBLASTP svg
NC_004631:27553062755306277886423559Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-0867.9BLASTN svgBLASTP svg
NC_004631:38419753841975386463222658Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-0867.9BLASTN svgBLASTP svg
NC_006511:37595503759550378272123172Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-0867.9BLASTN svgBLASTP svg
NC_010102:39199993919999394268422686Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,5e-0867.9BLASTN svgBLASTP svg
NC_011080:2789744*2789744281281123068Salmonella enterica subsp. enterica serovar Newport str. SL254,5e-0867.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004547:843475*84347586442120947Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011149:2701916*2701916272409922184Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-0765.9BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_021066:17780001778000179688518886Raoultella ornithinolytica B6, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002797:4411763*4411763444042528663Escherichia coli NA114, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_003198:2703013*2703013272616623154Salmonella enterica subsp. enterica serovar Typhi str. CT18,8e-0763.9BLASTN svgBLASTP svg
NC_003198:3586000*3586000360812122122Salmonella enterica subsp. enterica serovar Typhi str. CT18,8e-0763.9BLASTN svgBLASTP svg
NC_004631:283289*28328930183618548Salmonella enterica subsp. enterica serovar Typhi Ty2, complete8e-0763.9BLASTN svgBLASTP svg
NC_006511:4119332*4119332413716217831Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-0763.9BLASTN svgBLASTP svg
NC_006905:2805877*2805877282870222826Salmonella enterica subsp. enterica serovar Choleraesuis str8e-0763.9BLASTN svgBLASTP svg
NC_007164:511171*51117153769026520Corynebacterium jeikeium K411, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010694:15020191502019153332131303Erwinia tasmaniensis, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_020063:2011019*2011019203659925581Enterobacteriaceae bacterium strain FGI 57, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012880:27787952778795280217023376Dickeya dadantii Ech703, complete genome3e-0661.9BLASTN svgBLASTP svg