Pre_GI: BLASTP Hits

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Query: NC_016776:625628:641499 Bacteroides fragilis 638R, complete genome

Start: 641499, End: 642059, Length: 561

Host Lineage: Bacteroides fragilis; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Although only a minor component of the human gut microflora, this organism is a major component of clinical specimens and is the most common anaerobe isolated.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006347:625328:638035638035638796762Bacteroides fragilis YCH46, complete genomeRNA polymerase ECF-type sigma factor6e-99359
NC_015164:2683162:268699926869992687556558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-54212
NC_009615:4031335:404888040488804049425546Parabacteroides distasonis ATCC 8503 chromosome, complete genomeECF-type RNA polymerase sigma factor1e-52206
NC_015164:1812439:182623318262331826790558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-28125
NC_009615:2902871:291847629184762919027552Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor3e-1581.3
NC_009615:3756196:376116937611693761735567Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor8e-1476.6
NC_016609:4152977:416982841698284170394567Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1375.1
NC_015160:4285542:430098843009884301557570Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1373.9
NC_009615:1469642:151497515149751515514540Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-1169.3
NC_013132:35061:544375443754988552Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1066.2
NC_015497:4683741:470916247091624709653492Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1065.9
NC_004663:5194400:520235452023545202908555Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-1065.9
NC_015277:5211779:522919252291925229782591Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0962.4
NC_014934:869715:876370876370876804435Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily2e-0962.4
NC_015160:2239933:226227222622722262844573Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0962.4
NC_013421:1954915:197163419716341972143510Pectobacterium wasabiae WPP163, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0961.6
NC_016609:6136411:615649361564936157086594Niastella koreensis GR20-10 chromosome, complete genomeRNA polymerase, sigma subunit, SigX3e-0961.6
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor3e-0961.6
NC_016609:4233701:423984042398404240400561Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0961.2
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor6e-0960.5
NC_016610:2489415:249031924903192490903585Tannerella forsythia ATCC 43037 chromosome, complete genomeRNA polymerase sigma-70 factor8e-0960.1
NC_016776:1470596:149332214933221493837516Bacteroides fragilis 638R, complete genomeputative RNA polymerase ECF-type sigma factor7e-0960.1
NC_016609:5890292:591106159110615911663603Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0859.3
NC_011961:304158:307073307073307639567Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.3
NC_009614:1213500:124361912436191244167549Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase ECF-type sigma factor2e-0858.9
NC_004663:3801071:380107138010713801646576Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-0858.5
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI2e-0858.5
NC_015160:585220:589839589839590399561Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0858.2
NC_020409:584000:592654592654593223570Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative sigma-70 factor, ECF subfamily3e-0858.2
NC_015177:2642368:266242426624242662972549Pedobacter saltans DSM 12145 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0857.8
NC_015966:1145974:116775911677591168322564Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit5e-0857.4
NC_019960:260997:265241265241265822582Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 12e-0755.5
NC_013061:2288134:229508222950822295651570Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma factor, sigma-70 family2e-0755.5
NC_004663:3827521:384690938469093847418510Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor3e-0755.1
NC_013132:3877500:389615038961503896692543Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.1
NC_013132:3959258:397587939758793976442564Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.1
NC_013061:2077603:209216020921602092726567Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor3e-0754.7
NC_013061:1236235:125870212587021259268567Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0754.7
NC_015311:720631:726166726166726678513Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 24e-0754.7
NC_015160:3180193:319703631970363197602567Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative5e-0754.3
NC_007953:1088933:108893310889331089469537Burkholderia xenovorans LB400 chromosome 3, complete sequenceSigma-24 (FecI)6e-0753.9
NC_017080:1194199:119784911978491198454606Phycisphaera mikurensis NBRC 102666, complete genomeRNA polymerase ECF-type sigma factor7e-0753.5
NC_004663:1983439:198760019876001988163564Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor1e-0653.1
NC_015160:1734454:175079817507981751364567Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.8
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor2e-0652.4
NC_009614:868452:874565874565875092528Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase ECF-type sigma factor2e-0652
NC_015160:3749636:375426437542643754857594Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family3e-0651.6
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family3e-0651.6
NC_019960:1272956:131266813126681313201534Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 13e-0651.6
NC_015593:2841856:288400728840072884540534Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeECF subfamily RNA polymerase sigma-24 subunit4e-0651.2
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0650.8
NC_013061:3390399:339834033983403398918579Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor5e-0650.8
NC_015277:2283530:229844122984412299025585Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.4