Pre_GI: BLASTN Hits

Some Help

Query: NC_016582:9076686 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9076686, End: 9101750, Length: 25065

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013093:42478114247811427081623006Actinosynnema mirum DSM 43827, complete genome6e-29137BLASTN svgBLASTP svg
NC_013093:65111086511108653012519018Actinosynnema mirum DSM 43827, complete genome2e-28135BLASTN svgBLASTP svg
NC_015145:923979239712169429298Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome7e-115422BLASTN svgBLASTP svg
NC_007510:973828*97382899616822341Burkholderia sp. 383 chromosome 1, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_015671:1865752*1865752188581920068Cellvibrio gilvus ATCC 13127 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_009921:49485004948500497677728278Frankia sp. EAN1pec, complete genome0948BLASTN svgBLASTP svg
NC_009921:30732873073287309378120495Frankia sp. EAN1pec, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009921:52200052200056210240103Frankia sp. EAN1pec, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013169:872698726911060923341Kytococcus sedentarius DSM 20547, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014391:35968123596812361791421103Micromonospora aurantiaca ATCC 27029 chromosome, complete genome0801BLASTN svgBLASTP svg
NC_014815:56030005603000562327720278Micromonospora sp. L5 chromosome, complete genome0793BLASTN svgBLASTP svg
NC_009142:40463764046376406758021205Saccharopolyspora erythraea NRRL 2338, complete genome2e-180640BLASTN svgBLASTP svg
NC_003911:25404532540453256752127069Silicibacter pomeroyi DSS-3, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013947:66780006678000670076922770Stackebrandtia nassauensis DSM 44728 chromosome, complete genome6e-103383BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007333:174389017438901873648129759Thermobifida fusca YX, complete genome2e-35159BLASTN svgBLASTP svg
NC_013510:1*11865618656Thermomonospora curvata DSM 43183, complete genome5e-51210BLASTN svgBLASTP svg
NC_013530:16492141649214168158732374Xylanimonas cellulosilytica DSM 15894, complete genome5e-0867.9BLASTN svgBLASTP svg