Query: NC_016582:9076686 Streptomyces bingchenggensis BCW-1 chromosome, complete genome
Start: 9076686, End: 9101750, Length: 25065
Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_009921:4948500 | 4948500 | 4976777 | 28278 | Frankia sp. EAN1pec, complete genome | 0 | 948 | BLASTN svg | BLASTP svg |
NC_014391:3596812 | 3596812 | 3617914 | 21103 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 0 | 801 | BLASTN svg | BLASTP svg |
NC_014815:5603000 | 5603000 | 5623277 | 20278 | Micromonospora sp. L5 chromosome, complete genome | 0 | 793 | BLASTN svg | BLASTP svg |
NC_009142:4046376 | 4046376 | 4067580 | 21205 | Saccharopolyspora erythraea NRRL 2338, complete genome | 2e-180 | 640 | BLASTN svg | BLASTP svg |
NC_015145:92397 | 92397 | 121694 | 29298 | Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome | 7e-115 | 422 | BLASTN svg | BLASTP svg |
NC_013947:6678000 | 6678000 | 6700769 | 22770 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 6e-103 | 383 | BLASTN svg | BLASTP svg |
NC_013510:1* | 1 | 18656 | 18656 | Thermomonospora curvata DSM 43183, complete genome | 5e-51 | 210 | BLASTN svg | BLASTP svg |
NC_007333:1743890 | 1743890 | 1873648 | 129759 | Thermobifida fusca YX, complete genome | 2e-35 | 159 | BLASTN svg | BLASTP svg |
NC_013093:4247811 | 4247811 | 4270816 | 23006 | Actinosynnema mirum DSM 43827, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_013093:6511108 | 6511108 | 6530125 | 19018 | Actinosynnema mirum DSM 43827, complete genome | 2e-28 | 135 | BLASTN svg | BLASTP svg |
NC_015671:1865752* | 1865752 | 1885819 | 20068 | Cellvibrio gilvus ATCC 13127 chromosome, complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_003911:2540453 | 2540453 | 2567521 | 27069 | Silicibacter pomeroyi DSS-3, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009921:3073287 | 3073287 | 3093781 | 20495 | Frankia sp. EAN1pec, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_013169:87269 | 87269 | 110609 | 23341 | Kytococcus sedentarius DSM 20547, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_013530:1649214 | 1649214 | 1681587 | 32374 | Xylanimonas cellulosilytica DSM 15894, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_009921:522000 | 522000 | 562102 | 40103 | Frankia sp. EAN1pec, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007510:973828* | 973828 | 996168 | 22341 | Burkholderia sp. 383 chromosome 1, complete sequence | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003888:4031299 | 4031299 | 4054099 | 22801 | Streptomyces coelicolor A3(2), complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |